[ci] add another python version #33
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Test | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.8, "3.10", 3.12] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: python -m pip install flake8 pytest python-dateutil setuptools codecov pyflakes numpy cython astropy healpy | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Install package | |
| run: python setup.py install | |
| - name: Test with pytest | |
| run: | | |
| python -c 'import pandas, nwaylib, nwaylib.progress' | |
| coverage run setup.py test | |
| - name: pyflakes | |
| run: | | |
| pyflakes *.py nwaylib/*.py | grep -vE '(may be undefined|imported but unused|unable to detect undefined names|local variable ._|list comprehension redefines)' | tee static_errors | |
| cat static_errors | |
| if test -s static_errors; then exit 2; else true; fi | |
| - name: API test | |
| run: coverage run -a nway-apitest.py | |
| - name: submit coverage results | |
| run: codecov | |
| - name: nway-write-header | |
| run: | | |
| echo "backend: Agg" > matplotlibrc | |
| cd doc/ | |
| echo "backend: Agg" > matplotlibrc | |
| nway-write-header.py COSMOS_OPTICAL.fits OPT 2 | |
| nway-write-header.py COSMOS_IRAC.fits IRAC 2 | |
| nway-write-header.py COSMOS_XMM.fits XMM 2 | |
| - name: creating offset catalogues | |
| working-directory: doc | |
| run: | | |
| nway-create-fake-catalogue.py --radius 20 COSMOS_XMM.fits COSMOS_XMM-fake.fits | |
| test -e COSMOS_XMM-fake.fits | |
| nway-create-shifted-catalogue.py --radius 40 --shift-ra 60 COSMOS_XMM.fits COSMOS_XMM-shift.fits | |
| test -e COSMOS_XMM-shift.fits | |
| rm -f COSMOS_XMM-shift.fits | |
| nway-create-shifted-catalogue.py --radius 40 --shift-dec 60 COSMOS_XMM.fits COSMOS_XMM-shift.fits | |
| test -e COSMOS_XMM-shift.fits | |
| - name: 2 catalogue match | |
| working-directory: doc | |
| run: | | |
| nway.py COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2.fits --radius 20 | |
| test -e example2.fits | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2-offset.fits --radius 20 | |
| test -e example2-offset.fits | |
| # 2 catalogue match, with magnitudes | |
| - name: 2 catalogue match, with magnitudes | |
| working-directory: doc | |
| run: | | |
| nway.py COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2-mag.fits --radius 20 --mag OPT:MAG auto --mag-radius=4 | |
| test -e example2-mag.fits | |
| test -e OPT_MAG_fit.pdf | |
| test -e OPT_MAG_fit.txt | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 --out=example2-mag-offset.fits --radius 20 --mag OPT:MAG OPT_MAG_fit.txt | |
| test -e example2-mag-offset.fits | |
| - name: 3 catalogue match | |
| working-directory: doc | |
| run: | | |
| nway.py COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --out=example3.fits --radius 20 | |
| test -e example3.fits | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --out=example3-offset.fits --radius 20 | |
| test -e example3-offset.fits | |
| - name: 3 catalogue match, with magnitudes | |
| working-directory: doc | |
| run: | | |
| nway.py --radius 20 COSMOS_XMM.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --mag OPT:MAG auto --mag IRAC:mag_ch1 auto --mag-radius 4 --out=example3-mag.fits | |
| test -e example3-mag.fits | |
| test -e IRAC_mag_ch1_fit.pdf | |
| test -e IRAC_mag_ch1_fit.txt | |
| nway.py COSMOS_XMM-shift.fits :pos_err COSMOS_OPTICAL.fits 0.1 COSMOS_IRAC.fits 0.5 --out=example3-mag-offset.fits --radius 20 --mag OPT:MAG OPT_MAG_fit.txt --mag IRAC:mag_ch1 IRAC_mag_ch1_fit.txt | |
| test -e example3-mag-offset.fits | |
| - name: nway-explain | |
| working-directory: doc | |
| run: | | |
| nway-explain.py example3.fits 422 | |
| - name: cutoff calibration | |
| working-directory: doc | |
| run: | | |
| nway-calibrate-cutoff.py example2.fits example2-offset.fits | |
| test -e example2.fits_p_any_cutoffquality.pdf | |
| test -e example2.fits_p_any_p_i.pdf | |
| nway-calibrate-cutoff.py example3-mag.fits example3-mag-offset.fits | |
| ls | |
| - name: test elliptical errors | |
| working-directory: tests/elltest | |
| run: | | |
| nway.py --radius=10.0 randomcatX.fits :pos_err randomcatO.fits 0.1 --out=random_circtest.fits --min-prob=0.01 | |
| nway-explain.py random_circtest.fits 95 | |
| nway.py --radius=10.0 randomcatX.fits :a:b randomcatO.fits 0.1 --out=random_asymtest.fits --min-prob=0.01 | |
| nway-explain.py random_asymtest.fits 95 | |
| nway.py --radius=10.0 randomcatX.fits :a:b:phi randomcatO.fits 0.1 --out=random_elltest.fits --min-prob=0.01 | |
| nway-explain.py random_elltest.fits 95 | |
| nway.py --radius=10.0 randomcatX.fits :a:b:phi randomcatR.fits :a:b:phi randomcatO.fits 0.1 --out=random3_elltest.fits --min-prob=0.01 | |
| nway-explain.py random3_elltest.fits 95 |