undefined binding 'GeometricEquations.SPDAE' in `@docs` block in src/modules/equations.md:23-30 ```@docs GeometricEquations.DAE GeometricEquations.PDAE GeometricEquations.HDAE GeometricEquations.IDAE GeometricEquations.LDAE GeometricEquations.SPDAE ```

undefined binding 'GeometricEquations.SPDAEProblem' in `@docs` block in src/modules/problems.md:28-35 ```@docs GeometricEquations.DAEProblem GeometricEquations.PDAEProblem GeometricEquations.HDAEProblem GeometricEquations.IDAEProblem GeometricEquations.LDAEProblem GeometricEquations.SPDAEProblem ```

failed to run `@example` block in src/problems.md:699-718 ```@example using GeometricIntegrators # hide function v(t, q, v, params) v[1] = + params.λ * q[2] v[2] = - params.λ * q[1] end function B(t, q, B, params) for j in axes(B, 2) B[1,j] = + params.ν * q[2] B[2,j] = - params.ν * q[1] end end tspan = (0.0, 1.0) tstep = 0.01 q₀ = [0.5, 0.0] prob = SDEProblem(v, B, tspan, tstep, q₀; parameters = (λ=2.0, μ=1.0)) ``` exception = MethodError: no method matching (EquationProblem{SDE, dType} where dType<:Number)(::typeof(Main.__atexample__233.v), ::typeof(Main.__atexample__233.B), ::Tuple{Float64, Float64}, ::Float64, ::Vector{Float64}; parameters::@NamedTuple{λ::Float64, μ::Float64}) Closest candidates are: (EquationProblem{SDE, dType} where dType<:Number)(::Any, ::Any, ::Any, ::Any, ::Any, !Matched::StateVariable; kwargs...) @ GeometricEquations ~/.julia/packages/GeometricEquations/AQAMa/src/sdes/sde.jl:176 (EquationProblem{SDE, dType} where dType<:Number)(::Any, ::Any, ::Any, ::Any, ::Any, !Matched::NamedTuple; invariants, parameters, periodicity) @ GeometricEquations ~/.julia/packages/GeometricEquations/AQAMa/src/sdes/sde.jl:170 Stacktrace: [1] top-level scope @ problems.md:717 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/problems.md:730-754 ```@example using GeometricIntegrators # hide function v(v, t, q, p, params) v[1] = + params.λ * p[1] end function f(f, t, q, p, params) f[1] = - params.λ * q[1] end function B(B, t, q, p, params) B[1,1] = params.ν * p[1] end function G(G, t, q, p, params) G[1,1] = - params.ν * q[1] end tspan = (0.0, 1.0) tstep = 0.01 q₀ = [0.5] p₀ = [0.0] prob = PSDEProblem(v, f, B, G, tspan, tstep, q₀, p₀; parameters = (λ=2.0, μ=1.0)) ``` exception = MethodError: no method matching (EquationProblem{PSDE, dType} where dType<:Number)(::typeof(Main.__atexample__234.v), ::typeof(Main.__atexample__234.f), ::typeof(Main.__atexample__234.B), ::typeof(Main.__atexample__234.G), ::Tuple{Float64, Float64}, ::Float64, ::Vector{Float64}, ::Vector{Float64}; parameters::@NamedTuple{λ::Float64, μ::Float64}) Closest candidates are: (EquationProblem{PSDE, dType} where dType<:Number)(::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, !Matched::StateVariable, !Matched::StateVariable; kwargs...) @ GeometricEquations ~/.julia/packages/GeometricEquations/AQAMa/src/sdes/psde.jl:208 (EquationProblem{PSDE, dType} where dType<:Number)(::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, !Matched::NamedTuple; invariants, parameters, periodicity) @ GeometricEquations ~/.julia/packages/GeometricEquations/AQAMa/src/sdes/psde.jl:201 Stacktrace: [1] top-level scope @ problems.md:753 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

failed to run `@example` block in src/problems.md:766-798 ```@example using GeometricIntegrators # hide function v(v, t, q, p, params) v[1] = + params.λ * p[1] end function f1(f, t, q, p, params) f[1] = - params.λ * q[1] end function f2(f, t, q, p, params) f[1] = 0 end function B(B, t, q, p, params) B[1,1] = params.ν * p[1] end function G1(G, t, q, p, params) G[1,1] = - params.ν * q[1] end function G2(G, t, q, p, params) G[1,1] = 0 end tspan = (0.0, 1.0) tstep = 0.01 q₀ = [0.5] p₀ = [0.0] prob = SPSDEProblem(v, f1, f2, B, G1, G2, tspan, tstep, q₀, p₀; parameters = (λ=2.0, μ=1.0)) ``` exception = MethodError: no method matching (EquationProblem{SPSDE, dType} where dType<:Number)(::typeof(Main.__atexample__235.v), ::typeof(Main.__atexample__235.f1), ::typeof(Main.__atexample__235.f2), ::typeof(Main.__atexample__235.B), ::typeof(Main.__atexample__235.G1), ::typeof(Main.__atexample__235.G2), ::Tuple{Float64, Float64}, ::Float64, ::Vector{Float64}, ::Vector{Float64}; parameters::@NamedTuple{λ::Float64, μ::Float64}) Closest candidates are: (EquationProblem{SPSDE, dType} where dType<:Number)(::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, !Matched::StateVariable, !Matched::StateVariable; kwargs...) @ GeometricEquations ~/.julia/packages/GeometricEquations/AQAMa/src/sdes/spsde.jl:240 (EquationProblem{SPSDE, dType} where dType<:Number)(::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, ::Any, !Matched::NamedTuple; invariants, parameters, periodicity) @ GeometricEquations ~/.julia/packages/GeometricEquations/AQAMa/src/sdes/spsde.jl:233 Stacktrace: [1] top-level scope @ problems.md:797 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/1HwWe/src/expander_pipeline.jl:752

no doc found for reference '[`SPDAEProblem`](@ref)' in src/problems.md.

no doc found for reference '[`SPDAEProblem`](@ref)' in src/tutorial.md.

Process completed with exit code 1.

38 docstrings not included in the manual: GeometricIntegrators.Integrators.CoefficientsPGLRK GeometricBase.NullInvariants RungeKutta.solve_simplifying_assumption_b :: Union{Tuple{AbstractVector{T}}, Tuple{T}} where T GeometricBase.integrate GeometricIntegrators.Integrators.HPICache GeometricBase.AbstractVariable RungeKutta.solve_simplifying_assumption_c :: Union{Tuple{AbstractVector{T}}, Tuple{T}} where T GeometricBase.vectorfield :: Tuple{GeometricBase.AbstractStateVariable} GeometricBase.invariants :: Tuple{GeometricProblem} GeometricBase.AbstractScalarVariable RungeKutta.SymplecticPartitionedTableau :: Union{Tuple{Tableau{TT}}, Tuple{TT}} where TT RungeKutta.from_file :: Tuple{AbstractString, AbstractString} RungeKutta.SymplecticConjugateTableau :: Union{Tuple{Tableau{TT}}, Tuple{TT}} where TT RungeKutta.SymplecticTableau :: Union{Tuple{Tableau{TT}}, Tuple{TT}} where TT GeometricBase.solutions :: Tuple{GeometricProblem} RungeKutta.to_file :: Union{Tuple{T}, Tuple{AbstractString, Tableau{T}}} where T GeometricBase.GeometricData GeometricEquations.PODEEnsemble GeometricEquations.Tests.ExponentialGrowth GeometricIntegrators.Integrators.IntegratorCachePMVI GeometricIntegrators.Integrators.DVICache GeometricBase.StateVector GeometricBase.NullPeriodicity GeometricEquations.IODEEnsemble GeometricBase.zerovector :: Union{Tuple{ST}, Tuple{VT}} where {VT, ST<:AbstractVector{VT}} GeometricBase.NullParameters GeometricEquations.LODEEnsemble RungeKutta.solve_simplifying_assumption_d :: Union{Tuple{T}, Tuple{AbstractVector{T}, AbstractVector{T}}} where T GeometricEquations.HODEEnsemble GeometricBase.AbstractStateVariable GeometricBase.functions :: Tuple{GeometricProblem} GeometricBase.equation :: Tuple{GeometricProblem} RungeKutta._shifted_legendre :: Union{Tuple{Any}, Tuple{Any, Any}} RungeKutta._legendre :: Union{Tuple{T}, Tuple{Integer, Polynomials.Polynomial{T}}} where T GeometricEquations.ODEEnsemble GeometricEquations.SODEEnsemble GeometricIntegrators.Integrators.VPRKCache GeometricEquations.promote_tspan :: Union{Tuple{Tuple{T, S}}, Tuple{S}, Tuple{T}} where {T, S} These are docstrings in the checked modules (configured with the modules keyword) that are not included in canonical @docs or @autodocs blocks.