Write Pulseq #1314
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| push: | |
| branches: | |
| - master | |
| tags: '*' | |
| jobs: | |
| ci: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 60 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.9' # Replace this with the minimum Julia version that your package supports. E.g. if your package requires Julia 1.5 or higher, change this to '1.5'. | |
| - '1' # Leave this line unchanged. '1' will automatically expand to the latest stable 1.x release of Julia. | |
| os: [ubuntu-latest, windows-latest, macos-12] # macos-latest] <- M1 Mac was generating problems #386, commented for now | |
| arch: [x64] | |
| include: | |
| - os: ubuntu-latest | |
| prefix: xvfb-run # julia-actions/julia-runtest/blob/master/README.md | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - uses: actions/cache@v4 | |
| env: | |
| cache-name: cache-artifacts | |
| with: | |
| path: ~/.julia/artifacts | |
| key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-test-${{ env.cache-name }}- | |
| ${{ runner.os }}-test- | |
| ${{ runner.os }}- | |
| - name: "KomaMRIBase: Build" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-buildpkg@v1 | |
| with: | |
| project: KomaMRIBase | |
| - name: "KomaMRIBase: Run Tests" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-runtest@v1 | |
| with: | |
| project: KomaMRIBase | |
| - name: "KomaMRICore: Development Setup" | |
| if: '!cancelled()' | |
| shell: bash | |
| run: | | |
| julia --color=yes --project="KomaMRICore" -e "using Pkg; Pkg.develop(PackageSpec(; path=\"./KomaMRIBase\"));" | |
| - name: "KomaMRICore: Build" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-buildpkg@v1 | |
| with: | |
| project: KomaMRICore | |
| - name: "KomaMRICore: Run Tests" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-runtest@v1 | |
| with: | |
| project: KomaMRICore | |
| - name: "KomaMRIFiles: Development Setup" | |
| if: '!cancelled()' | |
| shell: bash | |
| run: | | |
| julia --color=yes --project="KomaMRIFiles" -e "using Pkg; Pkg.develop(PackageSpec(; path=\"./KomaMRIBase\"));" | |
| - name: "KomaMRIFiles: Build" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-buildpkg@v1 | |
| with: | |
| project: KomaMRIFiles | |
| - name: "KomaMRIFiles: Run Tests" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-runtest@v1 | |
| with: | |
| project: KomaMRIFiles | |
| - name: "KomaMRIPlots: Development Setup" | |
| if: '!cancelled()' | |
| shell: bash | |
| run: | | |
| julia --color=yes --project="KomaMRIPlots" -e "using Pkg; Pkg.develop(PackageSpec(; path=\"./KomaMRIBase\"));" | |
| - name: "KomaMRIPlots: Build" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-buildpkg@v1 | |
| with: | |
| project: KomaMRIPlots | |
| - name: "KomaMRIPlots: Run Tests" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-runtest@v1 | |
| with: | |
| project: KomaMRIPlots | |
| prefix: ${{ matrix.prefix }} # for `xvfb-run` | |
| - name: "KomaMRI: Development Setup" | |
| if: '!cancelled()' | |
| shell: julia --color=yes --project {0} | |
| run: | | |
| using Pkg | |
| Pkg.develop([ | |
| PackageSpec(path=pwd(), subdir="KomaMRIBase"), | |
| PackageSpec(path=pwd(), subdir="KomaMRICore"), | |
| PackageSpec(path=pwd(), subdir="KomaMRIFiles"), | |
| PackageSpec(path=pwd(), subdir="KomaMRIPlots") | |
| ]) | |
| - name: "KomaMRI: Build" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-buildpkg@v1 | |
| - name: "KomaMRI: Run Tests" | |
| if: '!cancelled()' | |
| uses: julia-actions/julia-runtest@v1 | |
| with: | |
| prefix: ${{ matrix.prefix }} # for `xvfb-run` | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: src | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| flags: komamri | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: KomaMRIBase/src | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| flags: base | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: KomaMRICore/src | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| flags: core | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: KomaMRIPlots/src | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| flags: plots | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| with: | |
| directories: KomaMRIFiles/src | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| files: lcov.info | |
| flags: files | |
| token: ${{ secrets.CODECOV_TOKEN }} # required | |
| docs: | |
| if: '!cancelled()' | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1' | |
| - name: "Documentation dev environment setup" | |
| run: | | |
| julia --project=docs -e ' | |
| using Pkg | |
| Pkg.develop([ | |
| PackageSpec(path=pwd(), subdir="."), | |
| PackageSpec(path=pwd(), subdir="KomaMRIBase"), | |
| PackageSpec(path=pwd(), subdir="KomaMRICore"), | |
| PackageSpec(path=pwd(), subdir="KomaMRIFiles"), | |
| PackageSpec(path=pwd(), subdir="KomaMRIPlots") | |
| ]) | |
| Pkg.instantiate()' | |
| - name: "Testing documentation (doctest)" | |
| run: | | |
| julia --project=docs -e ' | |
| using Documenter: doctest | |
| using KomaMRI | |
| doctest(KomaMRI)' | |
| - if: ${{ !contains( github.event.pull_request.labels.*.name, 'documentation' ) }} | |
| name: "Building documentation (docs/make.jl)" | |
| run: julia --project=docs docs/make.jl | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} | |
| - if: ${{ contains( github.event.pull_request.labels.*.name, 'documentation' ) }} | |
| name: "Building documentation (docs/make.jl) - [PR] PUSH_PREVIEW" | |
| run: julia --project=docs docs/make.jl push_preview | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} | |
| Skip: | |
| if: contains(github.event.head_commit.message, '[skip ci]') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Skip CI 🚫 | |
| run: echo skip ci |