Code

Write Pulseq#284

Code

Open

beorostica wants to merge 128 commits intomasterJuliaHealth/KomaMRI.jl:masterfrom pulseqJuliaHealth/KomaMRI.jl:pulseqCopy head branch name to clipboard

+594-46

Commits

Commits on Jan 10, 2024

• Translate some functions and structs from Pulseq MATLAB to Julia

  beorostica

  committed
  a559ef4

• Add test code for writing a pulseq file from a Sequence struct

  beorostica

  committed
  7626005

Commits on Jan 15, 2024

• Merge branch 'master' into pulseq

  beorostica

  committed
  071ce8d

• Organize code and tests for writing Pulseq functionality

  beorostica

  committed
  20914f9

Commits on Jan 16, 2024

• Remove Pulseq written test files

  beorostica

  committed
  5239213

• Merge branch 'master' into pulseq

  beorostica

  committed
  d9aef17

Commits on Jan 19, 2024

• Merge branch 'master' into pulseq

  beorostica

  committed
  3b9d4d1

• Load pulseq sequences faster and allow comparison

  

  gabuzi

  authored and

  beorostica

  committed
  cae64de

Commits on Jan 23, 2024

• Add a test for fast read sequence

  beorostica

  committed
  efadc1a

• Restore previous tests in KomaMRIFiles

  beorostica

  committed
  b086efd

• Merge read .seq optimization branch into pulseq

  beorostica

  committed
  db4e10a

• Merge branch 'master' into pulseq

  beorostica

  committed
  4be6f65

• Test the optimized read function for reading more .seq examples

  beorostica

  committed
  e1ab97a

Commits on Jan 24, 2024

• Fix RF angles when writing .seq files

  beorostica

  committed
  4dc29d9

• Remove some comments when testing the write pulseq functionality

  beorostica

  committed
  e5728b5

Commits on Jan 25, 2024

• Remove the optimized read pulseq fuctionality from the write pulseq branch

  beorostica

  committed
  fd8822f

Commits on Jan 26, 2024

• Fix the precision of RF comparisons and RF delay

  beorostica

  committed
  cb07ea1

Commits on Apr 11, 2024

• Merge branch 'master' into pulseq

  beorostica

  committed
  004dca2

• Fix RF angle when writing .seq files

  beorostica

  committed
  0d4d5e0

• Update KomaMRIBase/src/datatypes/Sequence.jl

  Show description for 7d05c70
  

  beorostica

  and

  github-actions[bot]

  authored
  7d05c70

• Update KomaMRIBase/src/datatypes/Sequence.jl

  Show description for 372b751
  

  beorostica

  and

  github-actions[bot]

  authored
  372b751

• Update KomaMRIBase/src/datatypes/Sequence.jl

  Show description for 8749d36
  

  beorostica

  and

  github-actions[bot]

  authored
  8749d36

• Update KomaMRIBase/src/datatypes/sequence/ADC.jl

  Show description for 70f584e
  

  beorostica

  and

  github-actions[bot]

  authored
  70f584e

• Update KomaMRIBase/src/datatypes/sequence/RF.jl

  Show description for 807c0c4
  

  beorostica

  and

  github-actions[bot]

  authored
  807c0c4

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 0f1a395
  

  beorostica

  and

  github-actions[bot]

  authored
  0f1a395

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for da90d4c
  

  beorostica

  and

  github-actions[bot]

  authored
  da90d4c

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for a91698b
  

  beorostica

  and

  github-actions[bot]

  authored
  a91698b

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for e39fcf2
  

  beorostica

  and

  github-actions[bot]

  authored
  e39fcf2

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 2afd1fb
  

  beorostica

  and

  github-actions[bot]

  authored
  2afd1fb

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 4449abe
  

  beorostica

  and

  github-actions[bot]

  authored
  4449abe

• Update KomaMRIFiles/test/runtests.jl

  Show description for 93f7d86
  

  beorostica

  and

  github-actions[bot]

  authored
  93f7d86

• Update KomaMRIBase/src/datatypes/Sequence.jl

  Show description for e811d18
  

  beorostica

  and

  github-actions[bot]

  authored
  e811d18

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 98f87db
  

  beorostica

  and

  github-actions[bot]

  authored
  98f87db

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for ee4305c
  

  beorostica

  and

  github-actions[bot]

  authored
  ee4305c

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 9e1b9b1
  

  beorostica

  and

  github-actions[bot]

  authored
  9e1b9b1

• Update KomaMRIFiles/test/runtests.jl

  Show description for 972e623
  

  beorostica

  and

  github-actions[bot]

  authored
  972e623

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 62993c1
  

  beorostica

  and

  github-actions[bot]

  authored
  62993c1

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for bc4b83c
  

  beorostica

  and

  github-actions[bot]

  authored
  bc4b83c

• Update KomaMRIFiles/test/runtests.jl

  Show description for 6cbf779
  

  beorostica

  and

  github-actions[bot]

  authored
  6cbf779

• Update KomaMRIFiles/test/runtests.jl

  Show description for 5eee63a
  

  beorostica

  and

  github-actions[bot]

  authored
  5eee63a

• Update KomaMRIFiles/test/runtests.jl

  Show description for 2a31539
  

  beorostica

  and

  github-actions[bot]

  authored
  2a31539

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 082668b
  

  beorostica

  and

  github-actions[bot]

  authored
  082668b

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 874677e
  

  beorostica

  and

  github-actions[bot]

  authored
  874677e

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 5a06916
  

  beorostica

  and

  github-actions[bot]

  authored
  5a06916

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for eff7f20
  

  beorostica

  and

  github-actions[bot]

  authored
  eff7f20

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 4600a27
  

  beorostica

  and

  github-actions[bot]

  authored
  4600a27

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 64e9800
  

  beorostica

  and

  github-actions[bot]

  authored
  64e9800

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 30d1c72
  

  beorostica

  and

  github-actions[bot]

  authored
  30d1c72

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for bfea890
  

  beorostica

  and

  github-actions[bot]

  authored
  bfea890

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 579031e
  

  beorostica

  and

  github-actions[bot]

  authored
  579031e

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 6c3bd4c
  

  beorostica

  and

  github-actions[bot]

  authored
  6c3bd4c

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 24e6c90
  

  beorostica

  and

  github-actions[bot]

  authored
  24e6c90

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for dd723da
  

  beorostica

  and

  github-actions[bot]

  authored
  dd723da

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 0f186bd
  

  beorostica

  and

  github-actions[bot]

  authored
  0f186bd

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for ac99a92
  

  beorostica

  and

  github-actions[bot]

  authored
  ac99a92

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 37c0af3
  

  beorostica

  and

  github-actions[bot]

  authored
  37c0af3

• Add reviewdog suggestions

  beorostica

  committed
  595df76

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 23c1dc6
  

  beorostica

  and

  github-actions[bot]

  authored
  23c1dc6

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for a54fe2f
  

  beorostica

  and

  github-actions[bot]

  authored
  a54fe2f

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 54c92eb
  

  beorostica

  and

  github-actions[bot]

  authored
  54c92eb

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for b3c1658
  

  beorostica

  and

  github-actions[bot]

  authored
  b3c1658

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 5cae2ed
  

  beorostica

  and

  github-actions[bot]

  authored
  5cae2ed

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 2b0a634
  

  beorostica

  and

  github-actions[bot]

  authored
  2b0a634

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 6daf695
  

  beorostica

  and

  github-actions[bot]

  authored
  6daf695

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 48e4aaf
  

  beorostica

  and

  github-actions[bot]

  authored
  48e4aaf

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 3b3d5c7
  

  beorostica

  and

  github-actions[bot]

  authored
  3b3d5c7

• Delete in word in write pulseq file

  beorostica

  committed
  7d25a25

• Delete blank spaces from write pulseq file

  beorostica

  committed
  a5466e5

• Apply format style to write pulseq file

  beorostica

  committed
  04519f0

• Add some reviewdog suggestions

  beorostica

  committed
  d729110

• Add some reviewdog suggestions

  beorostica

  committed
  c16fd19

• Add some reviewdog suggestions

  beorostica

  committed
  32f3295

• Create common pulseq examples folder for KomaMRIFiles tests

  beorostica

  committed
  58a7789

• Add write sequence to API documentation

  beorostica

  committed
  2456434

Commits on Apr 12, 2024

• Fix when writting zero amplitude gradients

  beorostica

  committed
  bbed561

• Remove magsign function when writing pulseq

  beorostica

  committed
  8147b7b

• Add reviewdog style suggestion

  beorostica

  committed
  f00f10d

• Remove duplicated compress function

  beorostica

  committed
  4c7729a

• Add some spaces to comments

  beorostica

  committed
  b5dcbed

• Replace some reshapes to [x;;] notation

  beorostica

  committed
  177d05d

• Add reviewdog style for __VERSION__

  beorostica

  committed
  99f9328

• Update KomaMRIPlots/src/KomaMRIPlots.jl

  Show description for 2f193cd
  

  beorostica

  and

  github-actions[bot]

  authored
  2f193cd

• Compare angles with exponential expression

  beorostica

  committed
  80f055c

Commits on Apr 15, 2024

• Add functions for safe comparison when writing pulseq

  beorostica

  committed
  e9c20d6

• Refactor safe comparison functions when writing pulseq

  beorostica

  committed
  43dcc62

• Consider all definitions when writing pulseq

  beorostica

  committed
  08cd263

• Update runtests for KomaMRIFiles

  beorostica

  committed
  bbb0858

Commits on Apr 16, 2024

• Define event on when writing pulseq

  beorostica

  committed
  0b668ec

• Refactor get unique events when writing pulseq

  beorostica

  committed
  2dd30b0

• Refactor and rewrite some RF related variables and functions when writing pulseq

  beorostica

  committed
  bcf5515

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for d26108b
  

  beorostica

  and

  github-actions[bot]

  authored
  d26108b

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for c6a2140
  

  beorostica

  and

  github-actions[bot]

  authored
  c6a2140

• Rename some ADC related variables when writing pulseq

  beorostica

  committed
  511dc91

• Rename some Grad related variables when writing pulseq

  beorostica

  committed
  72718e6

• Improve readability of @printf when writing pulseq

  Show description for 793d2ea
  

  beorostica

  and

  cncastillo

  authored
  793d2ea

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 517d7e2
  

  beorostica

  and

  github-actions[bot]

  authored
  517d7e2

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 5c2da8c
  

  beorostica

  and

  github-actions[bot]

  authored
  5c2da8c

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for b835beb
  

  beorostica

  and

  github-actions[bot]

  authored
  b835beb

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 458609e
  

  beorostica

  and

  github-actions[bot]

  authored
  458609e

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for d90bd4c
  

  beorostica

  and

  github-actions[bot]

  authored
  d90bd4c

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 69841da
  

  beorostica

  and

  github-actions[bot]

  authored
  69841da

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for 64ca46b
  

  beorostica

  and

  github-actions[bot]

  authored
  64ca46b

• Update KomaMRIFiles/src/Sequence/WritePulseq.jl

  Show description for bbd5715
  

  beorostica

  and

  github-actions[bot]

  authored
  bbd5715

• Fix @printf bugs when writing pulseq

  beorostica

  committed
  aba0007

• Refactor runtests for KomaMRIFiles

  beorostica

  committed
  600770b

• Remove extensions section when writing pulseq

  beorostica

  committed
  9832de0

• Refactor runtests for KomaMRIFiles

  beorostica

  committed
  7fd0f4b

• Update KomaMRIFiles/test/runtests.jl

  Show description for 35baedd
  

  beorostica

  and

  github-actions[bot]

  authored
  35baedd

• Update KomaMRIFiles/test/runtests.jl

  Show description for fdd77f8
  

  beorostica

  and

  github-actions[bot]

  authored
  fdd77f8

Commits on Apr 17, 2024

• Rename some Shapes related variables when writing pulseq

  beorostica

  committed
  bc5d51f

• Add table helper functions when writing pulseq

  beorostica

  committed
  b7e6e3c

• Add pacth for considering gradients with zero amplitude when writing pulseq

  beorostica

  committed
  cc359cc

• Refactor some new lines when writing pulseq

  beorostica

  committed
  7d6b94e

• Compare angles with isapprox when writing pulseq

  beorostica

  committed
  3d33e3c

Commits on Apr 18, 2024

• Create intermediate pulseq object when writing pulseq

  beorostica

  committed
  88e6482

• Add reviewdog suggestions

  beorostica

  committed
  f330473

• Refactor with tuples when writing pulseq

  beorostica

  committed
  724b10f

• Add get pulseq object function when writing pulseq

  beorostica

  committed
  6d1a75b

Commits on Apr 23, 2024

• Merge master into pulseq writer branch

  beorostica

  committed
  12c1927

• Fix bug when writing pulseq

  beorostica

  committed
  5c8a96e

Commits on Apr 24, 2024

• Optimize functions for writing pulseq

  beorostica

  committed
  ddd53f9

• Set zero-Grad when reading pulseq gradients with zero amplitude

  beorostica

  committed
  3f7be9f

• Optimize function when writing pulseq

  beorostica

  committed
  c73dd9a

• Revert return conditional when reading pulseq gradients

  beorostica

  committed
  80aa28b

• Add a return statement

  beorostica

  committed
  636d359

Commits on Apr 25, 2024

• Remove some aux functions when writing pulseq

  beorostica

  committed
  41588bf

Commits on May 30, 2024

• Merge branch 'master' into pulseq

  cncastillo

  authored
  17fbe9b

Commits on Jun 4, 2024

• Merge branch 'master' into pulseq

  cncastillo

  authored
  1d2df48