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3D recon #324
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3D recon #324
Commits on Mar 13, 2024
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modified: ../KomaMRICore/src/rawdata/ISMRMRD.jl modified: KomaUI.jl
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Line 123 setup_raw() needs modifications for 3D?
modified: ExportUIFunctions.jl
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Commits on Mar 24, 2024
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Commits on Mar 27, 2024
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Commits on Mar 30, 2024
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Commits on Apr 5, 2024
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Commits on Apr 8, 2024
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Commits on May 15, 2024
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Commits on Jun 4, 2024
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Commits on Jun 5, 2024
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Commits on Jun 6, 2024
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Doctring updated for Sequence().
modified: KomaMRIBase/src/datatypes/Sequence.jl
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Fixed typo in Sequence() docstring.
modified: KomaMRIBase/src/datatypes/Sequence.jl
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Now exporting default_sim_params.
modified: KomaMRICore/src/KomaMRICore.jl
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Commits on Jun 7, 2024
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Changes to signal_to_raw_data, now separate counters for z and slices.
modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Fixed counter calculation for nz and ns for signal_to_raw_data.
modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Debugging counters for signal_to_raw_data. No need to reset the scan_…
…counter? modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Counters fixed. Needs some more testing. Ready to try 3D recon with M…
…RIReco. Need to configure reco_parameters. modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Commits on Jun 8, 2024
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Fixing 2D vs 3D in progress, 2D currently broken in KomaUI()!!
modified: ISMRMRD.jl
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Still forces 2D recons someplace...???!!!
modified: KomaMRICore/src/rawdata/ISMRMRD.jl modified: src/KomaUI.jl
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Debugging reconstruction calls from KomaUI().
modified: KomaMRICore/src/rawdata/ISMRMRD.jl modified: src/KomaUI.jl
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Debug raw data conversion for ge3d_cac.seq, something funny...!!!
modified: KomaMRICore/src/rawdata/ISMRMRD.jl modified: src/KomaUI.jl
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Commits on Jun 10, 2024
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A fair amount of work to estimate proper 3D recon parameters from seq…
…, and work and debugging of the scan counters for 3D. modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Commits on Jun 12, 2024
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Should fix test failure at: https://github.com/JuliaHealth/KomaMRI.jl/blob/931fec8f318b247dfbc90fa33f0b598216f6a3c8/KomaMRICore/test/runtests.jl#L154-L158 Mentioned: JuliaHealth#324 (comment) In draft PR: 3D recon JuliaHealth#324
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Added `use_ndseq` to `signal_to_raw_data()` docstring
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modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Check on Ny, Ns, Nz == 0 for scan counters.
modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Commits on Jun 13, 2024
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Defaulting to
use_ndseq=true
forsignal_to_raw_data
.modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Commits on Jun 17, 2024
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Commits on Jun 18, 2024
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Commits on Jun 19, 2024
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Commits on Jun 20, 2024
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Commits on Jun 24, 2024
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Commits on Jul 8, 2024
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Commits on Jul 9, 2024
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Working on central recon parameter estimation in KomaMRICore/src/rawd…
…ata/ISMRMRD.jl modified: KomaMRICore/src/KomaMRICore.jl modified: KomaMRICore/src/rawdata/ISMRMRD.jl modified: KomaMRIFiles/src/Sequence/Pulseq.jl
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Commits on Jul 15, 2024
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Commits on Jul 16, 2024
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Working on estimate_seq_recon_dimension, working for 2d multislice, n…
…ot for spiral modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Merge branch 'master' into 3D_recon
Conflicts: (fixed) KomaMRICore/src/rawdata/ISMRMRD.jl Changes to be committed: modified: KomaMRIBase/Project.toml modified: KomaMRIBase/src/KomaMRIBase.jl modified: KomaMRICore/Project.toml modified: KomaMRICore/src/KomaMRICore.jl modified: KomaMRICore/src/rawdata/ISMRMRD.jl modified: KomaMRICore/src/simulation/SimulatorCore.jl modified: KomaMRICore/test/Project.toml deleted: KomaMRICore/test/initialize.jl new file: KomaMRICore/test/initialize_backend.jl modified: KomaMRICore/test/runtests.jl modified: KomaMRIFiles/Project.toml modified: KomaMRIFiles/src/KomaMRIFiles.jl modified: KomaMRIFiles/src/Phantom/Phantom.jl modified: KomaMRIPlots/Project.toml modified: KomaMRIPlots/src/KomaMRIPlots.jl modified: Project.toml modified: src/KomaMRI.jl modified: src/KomaUI.jl
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Commits on Jul 17, 2024
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modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Forced type of Nx, Ny, Nz, Ns read from seq.DEF to be Int64.
Was not matching ::Tuple{Vararg{Int64, D}} in MRIBase ~/.julia/packages/MRIBase/GskMD/src/Datatypes/AcqData.jl:21 modified: KomaMRICore/src/rawdata/ISMRMRD.jl
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Commits on Jul 18, 2024
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LiearAlgebra added to Project. Check for radial sampling.
Need to have Nx, etc. be sequence structure and send separate matrix size for recon parameters. modified: Project.toml modified: src/KomaMRICore.jl modified: src/rawdata/ISMRMRD.jl modified: ../Project.toml
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Commits on Aug 5, 2024
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Commits on Sep 1, 2024
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Merge branch 'master_merge' into 3D_recon_merge
Conflicts: KomaMRICore/src/simulation/GPUFunctions.jl
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Commits on Sep 27, 2024
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Commits on Oct 3, 2024
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