Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add handling of an empty iterator for mean and var #29033

Merged
merged 5 commits into from
Oct 11, 2018
Merged

Add handling of an empty iterator for mean and var #29033

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
4f9028c
add handling of an empty iterator for mean and var
bkamins Sep 4, 2018
40b2ea7
additional tests
bkamins Sep 4, 2018
9e0b0ba
further cleanup of tests
bkamins Sep 4, 2018
0487d17
change to oftype and define mean of empty range
bkamins Sep 14, 2018
bff28ee
remove module qualifier
bkamins Sep 14, 2018
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 6 additions & 4 deletions stdlib/Statistics/src/Statistics.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,8 @@ julia> mean([√1, √2, √3])
function mean(f::Base.Callable, itr)
y = iterate(itr)
if y === nothing
throw(ArgumentError("mean of empty collection undefined: $(repr(itr))"))
return Base.mapreduce_empty_iter(f, Base.add_sum, itr,
Base.IteratorEltype(itr)) / 0
end
count = 1
value, state = y
Expand Down Expand Up @@ -131,7 +132,7 @@ _mean(A::AbstractArray{T}, region) where {T} = mean!(Base.reducedim_init(t -> t/
_mean(A::AbstractArray, ::Colon) = sum(A) / length(A)

function mean(r::AbstractRange{<:Real})
isempty(r) && throw(ArgumentError("mean of an empty range is undefined"))
isempty(r) && return oftype((first(r) + last(r)) / 2, NaN)
(first(r) + last(r)) / 2
end

Expand All @@ -148,7 +149,8 @@ var(iterable; corrected::Bool=true, mean=nothing) = _var(iterable, corrected, me
function _var(iterable, corrected::Bool, mean)
y = iterate(iterable)
if y === nothing
throw(ArgumentError("variance of empty collection undefined: $(repr(iterable))"))
T = eltype(iterable)
return oftype((abs2(zero(T)) + abs2(zero(T)))/2, NaN)
end
count = 1
value, state = y
Expand Down Expand Up @@ -265,7 +267,7 @@ varm(A::AbstractArray, m; corrected::Bool=true) = _varm(A, m, corrected, :)

function _varm(A::AbstractArray{T}, m, corrected::Bool, ::Colon) where T
n = length(A)
n == 0 && return typeof((abs2(zero(T)) + abs2(zero(T)))/2)(NaN)
n == 0 && return oftype((abs2(zero(T)) + abs2(zero(T)))/2, NaN)
return centralize_sumabs2(A, m) / (n - Int(corrected))
end

Expand Down
39 changes: 34 additions & 5 deletions stdlib/Statistics/test/runtests.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ end
end

@testset "mean" begin
@test_throws ArgumentError mean(())
@test_throws MethodError mean(())
@test mean((1,2,3)) === 2.
@test mean([0]) === 0.
@test mean([1.]) === 1.
Expand All @@ -86,6 +86,21 @@ end
@test ismissing(mean([missing, NaN]))
@test isequal(mean([missing 1.0; 2.0 3.0], dims=1), [missing 2.0])
@test mean(skipmissing([1, missing, 2])) === 1.5
@test isequal(mean(Complex{Float64}[]), NaN+NaN*im)
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

It would also make sense to test that an empty Int input gives a Float64 output, and that an error is thrown when the element type isn't known (e.g. using a generator).

BTW, you could probably use ===.

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This PR is in muddy waters :) You cannot use === as we have different NaN in Julia and here it would fail. Notice that:

julia> NaN === -NaN
false

and this is exactly the case here, that is why I had to use isequal.

I will add the tests.

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I must be missing something: you really expect NaN::Float64 here, right?

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The situation is more complex (and that is why I have used this as a test):

julia> x = mean(Complex{Float64}[])
NaN + NaN*im

julia> bitstring(x.re)
"1111111111111000000000000000000000000000000000000000000000000000"

julia> bitstring(x.im)
"1111111111111000000000000000000000000000000000000000000000000000"

julia> bitstring(NaN) # see that the bitstring is different
"0111111111111000000000000000000000000000000000000000000000000000"

also you have:

julia> x = mean(Int[])
NaN

julia> x === NaN
false

For the same reason that we have different NaNs in Julia (and as you see they actually happen in practice).

@test mean(Complex{Float64}[]) isa Complex{Float64}
@test isequal(mean(skipmissing(Complex{Float64}[])), NaN+NaN*im)
@test mean(skipmissing(Complex{Float64}[])) isa Complex{Float64}
@test isequal(mean(abs, Complex{Float64}[]), NaN)
@test mean(abs, Complex{Float64}[]) isa Float64
@test isequal(mean(abs, skipmissing(Complex{Float64}[])), NaN)
@test mean(abs, skipmissing(Complex{Float64}[])) isa Float64
@test isequal(mean(Int[]), NaN)
@test mean(Int[]) isa Float64
@test isequal(mean(skipmissing(Int[])), NaN)
@test mean(skipmissing(Int[])) isa Float64
@test_throws MethodError mean([])
@test_throws MethodError mean(skipmissing([]))
@test_throws ArgumentError mean((1 for i in 2:1))

# Check that small types are accumulated using wider type
for T in (Int8, UInt8)
Expand All @@ -104,15 +119,17 @@ end
@test f(2:0.1:n) ≈ f([2:0.1:n;])
end
end
@test mean(2:1) === NaN
@test mean(big(2):1) isa BigFloat
end

@testset "var & std" begin
# edge case: empty vector
# iterable; this has to throw for type stability
@test_throws ArgumentError var(())
@test_throws ArgumentError var((); corrected=false)
@test_throws ArgumentError var((); mean=2)
@test_throws ArgumentError var((); mean=2, corrected=false)
@test_throws MethodError var(())
@test_throws MethodError var((); corrected=false)
@test_throws MethodError var((); mean=2)
@test_throws MethodError var((); mean=2, corrected=false)
# reduction
@test isnan(var(Int[]))
@test isnan(var(Int[]; corrected=false))
Expand Down Expand Up @@ -245,6 +262,18 @@ end
@test ismissing(f([missing, NaN], missing))
@test f(skipmissing([1, missing, 2]), 0) === f([1, 2], 0)
end

@test isequal(var(Complex{Float64}[]), NaN)
@test var(Complex{Float64}[]) isa Float64
@test isequal(var(skipmissing(Complex{Float64}[])), NaN)
@test var(skipmissing(Complex{Float64}[])) isa Float64
@test_throws MethodError var([])
@test_throws MethodError var(skipmissing([]))
@test_throws MethodError var((1 for i in 2:1))
@test isequal(var(Int[]), NaN)
@test var(Int[]) isa Float64
@test isequal(var(skipmissing(Int[])), NaN)
@test var(skipmissing(Int[])) isa Float64
end

function safe_cov(x, y, zm::Bool, cr::Bool)
Expand Down