Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[PETSc] Upgrades petsc to 3.15.2 and enables multiple precision, scalar, and int types #3249

Merged
merged 6 commits into from
Jul 14, 2021
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
125 changes: 80 additions & 45 deletions P/PETSc/build_tarballs.jl
Original file line number Diff line number Diff line change
@@ -1,20 +1,19 @@
using BinaryBuilder

name = "PETSc"
version = v"3.13.4"
version = v"3.15.2"

# Collection of sources required to build PETSc. Avoid using the git repository, it will
# require building SOWING which fails in all non-linux platforms.
sources = [
ArchiveSource("https://www.mcs.anl.gov/petsc/mirror/release-snapshots/petsc-3.13.4.tar.gz",
"2cf8abd70ec332510b17bff7dc8a465bf1eb053e17e2a0451a4a0256385657d8"),
ArchiveSource("https://www.mcs.anl.gov/petsc/mirror/release-snapshots/petsc-3.15.2.tar.gz",
"3b10c19c69fc42e01a38132668724a01f1da56f5c353105cd28f1120cc9041d8"),
DirectorySource("./bundled"),
]

# Bash recipe for building across all platforms
script = raw"""
cd $WORKSPACE/srcdir/petsc*
includedir="${prefix}/include"
atomic_patch -p1 $WORKSPACE/srcdir/patches/petsc_name_mangle.patch

BLAS_LAPACK_LIB="${libdir}/libopenblas.${dlext}"
Expand All @@ -23,60 +22,96 @@ if [[ "${target}" == *-mingw* ]]; then
#atomic_patch -p1 $WORKSPACE/srcdir/patches/fix-header-cases.patch
MPI_LIBS="${libdir}/msmpi.${dlext}"
else
MPI_LIBS="[${libdir}/libmpi.${dlext},libmpifort.${dlext}]"
MPI_LIBS="[${libdir}/libmpifort.${dlext},${libdir}/libmpi.${dlext}]"
fi

./configure --prefix=${prefix} \
CC=${CC} \
FC=${FC} \
CXX=${CXX} \
COPTFLAGS='-O3' \
CXXOPTFLAGS='-O3' \
FOPTFLAGS='-O3' \
--with-64-bit-indices=0 \
--with-debugging=0 \
--with-batch \
--PETSC_ARCH=$target \
--with-blaslapack-lib=$BLAS_LAPACK_LIB \
--with-blaslapack-suffix="" \
--known-64-bit-blas-indices=0 \
--with-mpi-lib="${MPI_LIBS}" \
--known-mpi-int64_t=0 \
--with-mpi-include="${includedir}" \
--with-sowing=0
build_petsc()
{

if [[ "${target}" == *-mingw* ]]; then
export CPPFLAGS="-Dpetsc_EXPORTS"
elif [[ "${target}" == powerpc64le-* ]]; then
export CFLAGS="-fPIC"
export FFLAGS="-fPIC"
fi
if [[ "${3}" == "Int64" ]]; then
USE_INT64=1
else
USE_INT64=0
fi

make -j${nproc} \
PETSC_DIR="${PWD}" \
PETSC_ARCH="${target}" \
CPPFLAGS="${CPPFLAGS}" \
CFLAGS="${CFLAGS}" \
FFLAGS="${FFLAGS}" \
DEST_DIR="${prefix}" \
all
./configure --prefix=${prefix} \
CC=${CC} \
FC=${FC} \
CXX=${CXX} \
COPTFLAGS='-O3' \
CXXOPTFLAGS='-O3' \
CFLAGS='-fno-stack-protector' \
FOPTFLAGS='-O3' \
--with-64-bit-indices=${USE_INT64} \
--with-debugging=0 \
--with-batch \
--PETSC_ARCH=${target}_${1}_${2}_${3} \
--with-blaslapack-lib=$BLAS_LAPACK_LIB \
--with-blaslapack-suffix="" \
--known-64-bit-blas-indices=0 \
--with-mpi-lib="${MPI_LIBS}" \
--known-mpi-int64_t=0 \
--with-mpi-include="${includedir}" \
--with-sowing=0 \
--with-precision=${1} \
--with-scalar-type=${2}

make PETSC_DIR=$PWD PETSC_ARCH=$target DEST_DIR=$prefix install
if [[ "${target}" == *-mingw* ]]; then
export CPPFLAGS="-Dpetsc_EXPORTS"
elif [[ "${target}" == powerpc64le-* ]]; then
export CFLAGS="-fPIC"
export FFLAGS="-fPIC"
fi

if [[ "${target}" == *-mingw* ]]; then
# Move library to ${libdir} on Windows,
# changing the extension from so to dll.
mv ${prefix}/lib/libpetsc.so.*.*.* "${libdir}/libpetsc.${dlext}"
make -j${nproc} \
PETSC_DIR="${PWD}" \
PETSC_ARCH="${target}_${1}_${2}_${3}" \
CPPFLAGS="${CPPFLAGS}" \
CFLAGS="${CFLAGS}" \
FFLAGS="${FFLAGS}" \
DEST_DIR="${prefix}" \
all

make PETSC_DIR=$PWD PETSC_ARCH=${target}_${1}_${2}_${3} DEST_DIR=$prefix install

# add suffix to library name
if [[ "${target}" == *-mingw* ]]; then
# changing the extension from so to dll.
mv ${prefix}/lib/libpetsc.so.*.*.* "${libdir}/libpetsc_${1}_${2}_${3}.${dlext}"
elif [[ "${target}" == *-apple* ]]; then
mv ${prefix}/lib/libpetsc.*.*.*.${dlext} "${libdir}/libpetsc_${1}_${2}_${3}.${dlext}"
else
mv ${prefix}/lib/libpetsc.${dlext}.*.*.* "${libdir}/libpetsc_${1}_${2}_${3}.${dlext}"
fi
# Remove useless links
rm ${prefix}/lib/libpetsc.*
fi
# Remove duplicated file
rm ${prefix}/lib/pkgconfig/PETSc.pc
}

build_petsc double real Int32
build_petsc single real Int32
build_petsc double complex Int32
build_petsc single complex Int32
build_petsc double real Int64
build_petsc single real Int64
build_petsc double complex Int64
build_petsc single complex Int64
"""

# We attempt to build for all defined platforms
platforms = expand_gfortran_versions(supported_platforms(exclude=[Platform("i686", "windows")]))

products = [
LibraryProduct("libpetsc", :libpetsc),
LibraryProduct("libpetsc_double_real_Int32", :libpetsc), # Current default build
LibraryProduct("libpetsc_double_real_Int64", :libpetsc_Float64_Real_Int64),
LibraryProduct("libpetsc_single_real_Int64", :libpetsc_Float32_Real_Int64),
LibraryProduct("libpetsc_double_complex_Int64", :libpetsc_Float64_Complex_Int64),
LibraryProduct("libpetsc_single_complex_Int64", :libpetsc_Float32_Complex_Int64),
LibraryProduct("libpetsc_double_real_Int32", :libpetsc_Float64_Real_Int32),
LibraryProduct("libpetsc_single_real_Int32", :libpetsc_Float32_Real_Int32),
LibraryProduct("libpetsc_double_complex_Int32", :libpetsc_Float64_Complex_Int32),
LibraryProduct("libpetsc_single_complex_Int32", :libpetsc_Float32_Complex_Int32),
]

dependencies = [
Expand All @@ -87,4 +122,4 @@ dependencies = [
]

# Build the tarballs.
build_tarballs(ARGS, name, version, sources, script, platforms, products, dependencies; preferred_gcc_version = v"6")
build_tarballs(ARGS, name, version, sources, script, platforms, products, dependencies; preferred_gcc_version = v"9")
2 changes: 1 addition & 1 deletion P/PETSc/bundled/patches/petsc_name_mangle.patch
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ diff --git a/config/BuildSystem/config/packages/BlasLapack.py b/config/BuildSyst
index bbae50c096..9ad0a994eb 100644
--- a/config/BuildSystem/config/packages/BlasLapack.py
+++ b/config/BuildSystem/config/packages/BlasLapack.py
@@ -118,7 +118,8 @@ class Configure(config.package.Package):
@@ -121,7 +121,8 @@ class Configure(config.package.Package):
foundLapack = 0
self.f2c = 0
# allow a user-specified suffix to be appended to BLAS/LAPACK symbols
Expand Down