change default FET threshold

JustinChu · Oct 12, 2021 · e7db26b · e7db26b
1 parent cb478a4
commit e7db26b
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/Options.h b/src/Options.h
@@ -26,6 +26,6 @@ unsigned k = 25;
 string var = "";
 string ref = "";
 
-double scoreThresh= 0.05;
+double scoreThresh= 0.01;
 }
 #endif
diff --git a/src/ntSeqMatchEval.cpp b/src/ntSeqMatchEval.cpp
@@ -36,7 +36,7 @@ void printHelpDialog(){
 	const char dialog[] =
 	"Usage: " PROGRAM " [FILES...]\n"
 	"  -s, --score_thresh     Threshold to consider different given geometric\n"
-	"                         mean of Fisher's exact tests on each locus [0.05]\n"
+	"                         mean of Fisher's exact tests on each locus [0.01]\n"
 //	"  -t, --threads          Number of threads to run.[1]\n"
 	"  -h, --help             Display this dialog.\n"
 	"  -v, --verbose          Display verbose output.\n"