the appconsits of two parts:
- A Jupyter Notebook to select your Image folder and Gerenate the statistics
- A Dash application for the interactive statistical evaluation
Boths are work in Progress
Download the repository locally and install the requirements files
Requirements are python3 to be installed
We suggest using a local Visual Studio Code instance with a dedicateded conda environment
how to install VSC
how to install conda on windows
in VSC open a Termain alnd move to the folder you would like to intall this setup get the repository
git pull https://github.com/KJPMolgenLab/Stat_dash.git
# move to the folder
cd Stat_dash
# create a new conda environemnt with alle the prerequisites installes
conda env create -f environment.yml
# activate the new environment
conda activate organoid_clean
Now your kernel should be ready for the Jupyter notebook
within VSC you can now open the organoid_analysis.ipynb notbook and follow the instructions