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KatharinaJacoby/README.md

Emergency Physician → Clinical Systems Engineer


👩‍⚕️💻 About Me

I’m an emergency physician who builds software and automation tools

I fix things. Sometimes with code. Sometimes with adrenaline. I focus on:

  • Small, auditable tools (FastAPI, SQLite, scikit-learn) that fit into existing workflows.
  • Safety, transparency, and rollback paths—patient care always comes first.
  • Local-first design (no cloud dependencies, no unnecessary data sharing).
  • Advice-only systems—augmenting clinical work, never replacing judgment.

"I don’t build AI for healthcare. I build tools for healthcare professionals—where it adds real value."


🛠️ Projects

Advice-Only Pipeline with Local LLM & SPC Monitoring

Python • scikit-learn • FastAPI • SQLite • MIMIC-IV

  • CatBoost Models: provides real-time, interpretable risk predictions to support clinician decision-making.
  • SPC Monitoring: Shewhart/EWMA for real-time performance tracking (review prompts only)
  • Decoupled Architecture: Prediction pipeline + separate LLM assistant service
  • Local-Only: No cloud, no stored data - in-memory processing with JSONL audit logs

Key Features: ✅ Advice-only outputs (human approval required) ✅ Full audit trails for all system interactions ✅ Configurable probability thresholds ✅ Monthly SPC baseline updates

Status: Core pipeline functional


Heilmittel Assistent / BVBChecker

Python/FastAPI → Windows .exe (PyInstaller)

A local rules app for ICD-10 eligibility checks:

  • Runs offline, no data stored, ships with installer scripts.
  • Status: Core engine done; pilot testing next.

Medical T5 Mini

Hugging Face T5-small • DataCollator • Beam Search

Debugging-driven fine-tuning:

  • Solved a "True"-only bug via systematic isolation (task prefixing, pipeline cleaning).
  • Lesson: Debugging ML like a physician—rule out causes one by one.
  • Notebook: Kaggle

🧭 Clinical Systems Engineering

I use the term Clinical Systems Engineer because:

  • "Clinical" means starting with real healthcare problems.
  • "Systems" means focusing on entire workflows, not just models or apps.
  • "Engineer" means writing code, designing tools, and fixing bugs.

"Most healthcare tech is built by engineers who don’t understand clinics—or clinicians who don’t build. I do both."


🎓 Methodology

I apply clinical problem-solving to technical systems:

  1. Start with the problem, not the tool.
  2. Diagnose bugs like a clinician: data, model, or deployment?
  3. No black boxes—if we can’t explain it, it’s not ready.
  4. Test safely: shadow deployments and A/B tests, like clinical trials.

🤝 Collaboration

I’m open to collaborating on:

  • Open-source non-profit automation
  • Local/offline tools for resource-limited settings
  • Reproducible, ethical automation

Contact: [Email](k.jacoby at posteo.de)

Find my work:


🏆 Open Source

I contribute to open-source projects that make a real difference. Holopin Badges


"The future of healthcare isn’t about replacing professionals with technology. It’s about giving them better tools—built together, for everyone."


⚠️ AI Training Opt-Out This repository is excluded from all AI training datasets under GitHub’s DMCA policy. Violations will be reported.

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