Merge pull request #14 from georg-wolflein/main #85
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| name: Test preprocessing workflow | |
| on: | |
| push: | |
| branches: | |
| - dev_* # Run on all dev branches | |
| - main # Run on main branch | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| validate-workflow: | |
| name: Validate Workflow on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-22.04'] # 'ubuntu-20.04', 'ubuntu-18.04', 'macos-11.0', 'windows-2019' | |
| fail-fast: false | |
| steps: | |
| - name: Checkout # Check out a repo | |
| uses: actions/checkout@v2 | |
| - name: Echo OS | |
| run: echo "Running on ${{ matrix.os }}" | |
| - name: Install packages # Install dependencies | |
| run: | | |
| cd mlcontext | |
| sh test_workflow_setup.sh | |
| - name: Download test data and model | |
| run: | | |
| pip install -U --no-cache-dir gdown --pre | |
| retccl_model="mlcontext/best_ckpt.pth" | |
| ctranspath="mlcontext/ctranspath.pth" | |
| gdown https://drive.google.com/uc?id=1EOqdXSkIHg2Pcl3P8S4SGB5elDylw8O2 -O $retccl_model | |
| gdown "https://drive.google.com/u/0/uc?id=1DoDx_70_TLj98gTf6YTXnu4tFhsFocDX&export=download" -O $ctranspath | |
| gdown --folder https://drive.google.com/drive/folders/19HBBf4CTguLGNpuM8jLUWWGJlwO3lTRE?usp=share_link | |
| - name: Run preprocessing | |
| run: | | |
| singularity run mlcontext/e2e_container.sif run_wsi_norm.sh | |
| - name: run tests | |
| run: | | |
| singularity run mlcontext/e2e_container.sif run_test.sh |