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Don't use NA FDR items for HMP
Autoreconf Dist #182: Commit 0c631b2 pushed by benjamin-james
February 10, 2025 14:42 1m 0s dev
dev
February 10, 2025 14:42 1m 0s
deg filter NA
Autoreconf Dist #181: Commit 3007162 pushed by benjamin-james
February 10, 2025 14:38 48s dev
dev
February 10, 2025 14:38 48s
Save on space by deleting obs in not joining
Autoreconf Dist #180: Commit d51b911 pushed by benjamin-james
February 7, 2025 10:19 44s dev
dev
February 7, 2025 10:19 44s
Added trigamma inverse
Autoreconf Dist #179: Commit bbadf50 pushed by benjamin-james
February 6, 2025 16:11 43s dev
dev
February 6, 2025 16:11 43s
HMP prevent infinite mean
Autoreconf Dist #178: Commit b8bda50 pushed by benjamin-james
February 5, 2025 16:01 38s dev
dev
February 5, 2025 16:01 38s
Don't sum, average percentages
Autoreconf Dist #177: Commit 6890f85 pushed by benjamin-james
January 30, 2025 02:25 36s dev
dev
January 30, 2025 02:25 36s
Need correct rowdata invocation
Autoreconf Dist #176: Commit 2838da3 pushed by benjamin-james
January 30, 2025 00:57 35s dev
dev
January 30, 2025 00:57 35s
Need to specify Matrix::colSums
Autoreconf Dist #175: Commit 8bfdef0 pushed by benjamin-james
January 30, 2025 00:40 53s dev
dev
January 30, 2025 00:40 53s
Add percent by pathology to columns
Autoreconf Dist #174: Commit a5d33db pushed by benjamin-james
January 30, 2025 00:22 1m 52s dev
dev
January 30, 2025 00:22 1m 52s
Change default join_vars
Autoreconf Dist #173: Commit 4323416 pushed by benjamin-james
January 28, 2025 14:31 42s dev
dev
January 28, 2025 14:31 42s
missing comma
Autoreconf Dist #172: Commit 8666e81 pushed by benjamin-james
January 27, 2025 20:40 42s dev
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January 27, 2025 20:40 42s
Do not inner join var by default
Autoreconf Dist #171: Commit 8a44f27 pushed by benjamin-james
January 26, 2025 05:21 46s dev
dev
January 26, 2025 05:21 46s
Use anndata.concat to keep shared columns; delete rest
Autoreconf Dist #170: Commit c7af345 pushed by benjamin-james
January 25, 2025 17:45 37s dev
dev
January 25, 2025 17:45 37s
Removed print debugging info
Autoreconf Dist #169: Commit 9820f38 pushed by benjamin-james
January 25, 2025 13:44 35s dev
dev
January 25, 2025 13:44 35s
Aggregation/PCA GC, metadata printing
Autoreconf Dist #168: Commit 8833b32 pushed by benjamin-james
January 25, 2025 13:39 41s dev
dev
January 25, 2025 13:39 41s
GC collect after stages of pca
Autoreconf Dist #167: Commit 8e0d595 pushed by benjamin-james
January 24, 2025 03:11 47s dev
dev
January 24, 2025 03:11 47s
Add gc.collect after loading in X
Autoreconf Dist #166: Commit 9d69f60 pushed by benjamin-james
January 23, 2025 21:43 47s dev
dev
January 23, 2025 21:43 47s
Added int8 conversion, don't recompute blacklist stats
Autoreconf Dist #165: Commit 7c6c6c5 pushed by benjamin-james
January 23, 2025 01:12 36s dev
dev
January 23, 2025 01:12 36s
Remove blacklisted fragments from tile aggregation
Autoreconf Dist #164: Commit b2c1e01 pushed by benjamin-james
January 23, 2025 01:00 1m 29s dev
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January 23, 2025 01:00 1m 29s
import issparse
Autoreconf Dist #163: Commit 11f54c5 pushed by benjamin-james
January 22, 2025 21:22 39s dev
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January 22, 2025 21:22 39s
import numpy
Autoreconf Dist #162: Commit c873daa pushed by benjamin-james
January 22, 2025 21:02 38s dev
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January 22, 2025 21:02 38s
Edited IncrementalPCA to explicitly convert sparse mat to dense
Autoreconf Dist #161: Commit 289598f pushed by benjamin-james
January 22, 2025 20:59 34s dev
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January 22, 2025 20:59 34s
Added script for creating H5AD from PIC
Autoreconf Dist #160: Commit d519c74 pushed by benjamin-james
January 22, 2025 05:43 40s dev
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January 22, 2025 05:43 40s
spelling error
Autoreconf Dist #159: Commit f40b460 pushed by benjamin-james
January 22, 2025 04:25 39s dev
dev
January 22, 2025 04:25 39s
import the correct get_tss
Autoreconf Dist #158: Commit 04022d0 pushed by benjamin-james
January 22, 2025 04:22 39s dev
dev
January 22, 2025 04:22 39s