Combinatorial single-cell profiling of all major chromatin types with MAbID

Thank you for your interest in MAbID.

Table of contents

1. mabid_pipeline

• manual.html, containing the complete instructions to map raw MAbID data
• bin, containing all scripts used to map raw MAbID data

2. MAbIDR_1.0.0

• an R package to analyse MAbID data in R
• contains help-pages for each tool
• installation time: 3 minutes on a 2020 Macbook

3. demo

• test datasets
• Rmd and html example-code and results

Requirements

R (4.1) Cutadapt (3.0) Bowtie2 (2.2.9) samtools (1.10) scDamAndTools (1.0)

Installation

To install MAbIDR, run install.packages("MAbIDR_1.0.0.tar.gz", type="source"). This should take less then 5 minutes.

To use the mapping pipeline, run one of the file starting with mab-id_pipeline_