Thank you for your interest in MAbID.
- mabid_pipeline
- manual.html, containing the complete instructions to map raw MAbID data
- bin, containing all scripts used to map raw MAbID data
- MAbIDR_1.0.0
- an R package to analyse MAbID data in R
- contains help-pages for each tool
- installation time: 3 minutes on a 2020 Macbook
- demo
- test datasets
- Rmd and html example-code and results
R (4.1) Cutadapt (3.0) Bowtie2 (2.2.9) samtools (1.10) scDamAndTools (1.0)
To install MAbIDR, run install.packages("MAbIDR_1.0.0.tar.gz", type="source"). This should take less then 5 minutes.
To use the mapping pipeline, run one of the file starting with mab-id_pipeline_