Merge pull request #45 from Kinggerm/lrs

v1.7.1
Kinggerm · Jul 25, 2020 · 8dd4262 · 8dd4262
2 parents dc382cd + 4bf136f
commit 8dd4262
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/GetOrganelleLib/assembly_parser.py b/GetOrganelleLib/assembly_parser.py
@@ -2991,11 +2991,11 @@ def reseed_a_path(input_path, input_unique_vertex):
                     if log_handler:
                         log_handler.warning("More than one circular genome structure produced ...")
                         log_handler.warning("Please check the final result to confirm whether they are "
-                                            "simply flip-flop configurations!")
+                                            " simply different in SSC direction (two flip-flop configurations)!")
                     else:
                         sys.stdout.write("More than one circular genome structure produced ...\n")
                         sys.stdout.write("Please check the final result to confirm whether they are "
-                                         "simply flip-flop configurations!\n")
+                                         "simply different in SSC direction (two flip-flop configurations)!\n")
             return sorted_paths
 
     def get_all_paths(self, mode="embplant_pt", log_handler=None):
@@ -3239,11 +3239,11 @@ def directed_graph_solver(ongoing_paths, next_connections, vertices_left, in_all
                     if log_handler:
                         log_handler.warning("More than one structure (gene order) produced ...")
                         log_handler.warning("Please check the final result to confirm whether they are "
-                                            "simply flip-flop configurations!")
+                                            " simply different in SSC direction (two flip-flop configurations)!")
                     else:
                         sys.stdout.write("More than one structure (gene order) produced ...\n")
                         sys.stdout.write("Please check the final result to confirm whether they are "
-                                         "simply flip-flop configurations!\n")
+                                         " simply different in SSC direction (two flip-flop configurations)!\n")
             return sorted_paths
 
     def export_path(self, in_path):

diff --git a/GetOrganelleLib/versions.py b/GetOrganelleLib/versions.py
@@ -11,6 +11,7 @@ def get_versions():
          "get_organelle_from_assembly.py: do not convert gfa to fastg; ",
          "Assembly.get_all_circular_paths(): optimized for plastome order",
          "Assembly.reduce_to_subgraph: limit_offset_current_vertex -> bait_offsets; safer slim_graph.py performance",
+         "Assembly.get_all*_paths(): more detailed log info",
      ],
      "time": "2020-07-25 02:50 UTC+8"
     },