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update parameters in README.md
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shaomingfu committed Jun 28, 2017
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Expand Up @@ -94,7 +94,7 @@ Parameters | Default Value | Description
--min_transcript_coverage | 1.01 | the minimum coverage required to output a multi-exon transcript
--min_single_exon_coverage | 20 | the minimum coverage required to output a single-exon transcript
--min_exon_length | 50 | the minimum length of a transcript is: --min_transcript_length <br> + --min_exon_length * num-of-exons
--min_transcript_length |250 | the minimum length of a transcript is: --min_transcript_length <br> + --min_exon_length * num-of-exons
--min_transcript_length |150 | the minimum length of a transcript is: --min_transcript_length <br> + --min_exon_length * num-of-exons
--min_mapping_quality | 1 | ignore reads with mapping quality less than this value
--min_bundle_gap |50 | the minimum distances required to start a new bundle
--min_num_hits_in_bundle | 20 | the minimum number of reads required in a bundle
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