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Error in yacht convert #114
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Hi @OliverBryan, after checking the files you attached, I found the issue. The
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I have updated the |
Hi @OliverBryan, thanks for trying out my suggestion. I can't find the attached files in your last message. |
My apologies @chunyuma I forgot to attach it, I have attached it to this message. |
Hi @OliverBryan, sorry for the late response. I figured out the issue. When I wrote the script, for some reasons, I didn't expect the But thanks for letting me be aware of it. This should be a bug. I have fixed it in the code in this PR. |
Hi @chunyuma, Everything is working on my end with the updated |
Working with data from https://frl.publisso.de/data/frl:6425521/marine/short_read/marmgCAMI2_sample_0_reads.tar.gz and using a trained version of the gtdb database, I ran into the following error using
yacht convert
to convert the output of yacht into the cami format. I ranyacht convert --yacht_output 'result.xlsx' --sheet_name 'min_coverage1.0' --genome_to_taxid 'genome_to_taxid.tsv' --mode 'cami' --sample_name 'MySample' --outfile_prefix 'cami_result' --outdir ./
and got the following error:I have attached my
result.xlsx
filegenome_to_taxid.tsv
file (changed to a .txt file since github does not support .tsv files but nothing else is changed about it) for reference.result.xlsx
genome_to_taxid.txt
The text was updated successfully, but these errors were encountered: