🎨🐳 Replace jason-c-kwan with jasonkwan for docker images (#217)

KwanLab · Jan 12, 2022 · 3c65a57 · 3c65a57
1 parent cf23ce3
commit 3c65a57
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Showing 19 changed files with 25 additions and 25 deletions.
diff --git a/Makefile b/Makefile
@@ -63,14 +63,14 @@ install: setup.py
 test_environment: tests/requirements.txt
 	python3 -m pip install --requirement=tests/requirements.txt
 
-## Build docker image from Dockerfile (auto-taggged as jason-c-kwan/autometa:<current-branch>)
+## Build docker image from Dockerfile (auto-taggged as jasonkwan/autometa:<current-branch>)
 image: Dockerfile
-	docker build . -t jason-c-kwan/autometa:`git branch --show-current`
+	docker build . -t jasonkwan/autometa:`git branch --show-current`
 
 ## Build necessary docker images for nextflow modules from Dockerfiles in docker/modules
 modules-images: docker/modules/get_genomes_for_mock.Dockerfile docker/modules/mock_data_reporter.Dockerfile
-	docker build docker/modules/ -t jason-c-kwan/autometa-nf-modules-get_genomes_for_mock -f docker/modules/get_genomes_for_mock.Dockerfile
-	docker build docker/modules/ -t jason-c-kwan/autometa-nf-modules-mock_data_reporter -f docker/modules/mock_data_reporter.Dockerfile
+	docker build docker/modules/ -t jasonkwan/autometa-nf-modules-get_genomes_for_mock -f docker/modules/get_genomes_for_mock.Dockerfile
+	docker build docker/modules/ -t jasonkwan/autometa-nf-modules-mock_data_reporter -f docker/modules/mock_data_reporter.Dockerfile
 
 ## Build documentation for autometa.readthedocs.io
 docs:

diff --git a/modules/local/analyze_kmers.nf b/modules/local/analyze_kmers.nf
@@ -15,7 +15,7 @@ process ANALYZE_KMERS {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/autometa"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/bin_contigs.nf b/modules/local/bin_contigs.nf
@@ -15,7 +15,7 @@ process BIN_CONTIGS {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/binning_summary.nf b/modules/local/binning_summary.nf
@@ -17,7 +17,7 @@ process BINNING_SUMMARY {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/get_genomes_for_mock.nf b/modules/local/get_genomes_for_mock.nf
@@ -8,7 +8,7 @@ process GET_GENOMES_FOR_MOCK {
     def genome_count = options.args2.tokenize('|').size()
     tag "fetching ${genome_count} genomes"
     conda (params.enable_conda ? "bioconda::emboss=6.6.0" : null)
-    container "jason-c-kwan/autometa-nf-modules-get_genomes_for_mock"
+    container "jasonkwan/autometa-nf-modules-get_genomes_for_mock"
 
     output:
         path "metagenome.fna.gz", emit: metagenome

diff --git a/modules/local/hmmer_hmmsearch_filter.nf b/modules/local/hmmer_hmmsearch_filter.nf
@@ -29,7 +29,7 @@ process HMMER_HMMSEARCH_FILTER {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/length_table.nf b/modules/local/length_table.nf
@@ -15,7 +15,7 @@ process LENGTH_TABLE {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/majority_vote.nf b/modules/local/majority_vote.nf
@@ -17,7 +17,7 @@ process MAJORITY_VOTE {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/markers.nf b/modules/local/markers.nf
@@ -13,7 +13,7 @@ process MARKERS {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/merge_tsv.nf b/modules/local/merge_tsv.nf
@@ -16,7 +16,7 @@ process MERGE_TSV_WITH_HEADERS {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/mock_data_reporter.nf b/modules/local/mock_data_reporter.nf
@@ -12,7 +12,7 @@ process MOCK_DATA_REPORT {
     publishDir "${params.outdir_internal}/${options.publish_dir}",
       mode: params.publish_dir_mode
 
-    container "jason-c-kwan/autometa-nf-modules-mock_data_reporter"
+    container "jasonkwan/autometa-nf-modules-mock_data_reporter"
 
 
     input:

diff --git a/modules/local/parse_bed.nf b/modules/local/parse_bed.nf
@@ -15,7 +15,7 @@ process PARSE_BED {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/bedtools:2.30.0--hc088bd4_0"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/prepare_lca.nf b/modules/local/prepare_lca.nf
@@ -15,7 +15,7 @@ process PREPARE_LCA {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     storeDir 'db/lca'

diff --git a/modules/local/reduce_lca.nf b/modules/local/reduce_lca.nf
@@ -15,7 +15,7 @@ process REDUCE_LCA {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/spades_kmer_coverage.nf b/modules/local/spades_kmer_coverage.nf
@@ -16,7 +16,7 @@ process SPADES_KMER_COVERAGE {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/split_kingdoms.nf b/modules/local/split_kingdoms.nf
@@ -16,7 +16,7 @@ process SPLIT_KINGDOMS {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/modules/local/unclustered_recruitment.nf b/modules/local/unclustered_recruitment.nf
@@ -16,7 +16,7 @@ process RECRUIT {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     input:

diff --git a/subworkflows/local/prepare_ncbi_taxinfo.nf b/subworkflows/local/prepare_ncbi_taxinfo.nf
@@ -17,7 +17,7 @@ process TEST_DOWNLOAD {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     output:
@@ -40,7 +40,7 @@ process DOWNLOAD_ACESSION2TAXID {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     output:
@@ -73,7 +73,7 @@ process DOWNLOAD_TAXDUMP {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     output:

diff --git a/subworkflows/local/prepare_nr.nf b/subworkflows/local/prepare_nr.nf
@@ -18,7 +18,7 @@ process DOWNLOAD_NR {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     output:
@@ -48,7 +48,7 @@ process TEST_DOWNLOAD {
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
         container "https://depot.galaxyproject.org/singularity/YOUR-TOOL-HERE"
     } else {
-        container "jason-c-kwan/autometa:${params.autometa_image_tag}"
+        container "jasonkwan/autometa:${params.autometa_image_tag}"
     }
 
     output: