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Binning stats/taxonomy summary #99

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merged 12 commits into from
Sep 9, 2020
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Commits on Jun 25, 2020

  1. 🎨 Add kingdom-specific parameters/handling.

    🐛 Raise error if exception raised in call_orfs function.
    🎨 Change os.stat(...).st_size to os.path.getsize(...)
    evanroyrees committed Jun 25, 2020
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Commits on Jul 9, 2020

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  3. 🐎🎨 Update methods for MetaBin init

    🎨 Change run_binning method in user.py to account for MetaBin init
    🎨 Change get_kingdoms method in metagenome.py to account for MetaBin init
    🐎 Perform any file parsing once rather than per func.
    evanroyrees committed Jul 9, 2020
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  4. 🎨🐛 Update output summary columns.

    🐛 Change NCBI.CANONICAL_RANKS list to instance list
    🎨 Update recursive_dbscan.py func add_metrics marker lookup methods for better readability
    🎨 Remove output summary columns markers, duplicate_markers
    🎨 Calculate completeness and purity within metabin_stats func
    evanroyrees committed Jul 9, 2020
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Commits on Jul 22, 2020

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Commits on Jul 29, 2020

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Commits on Sep 3, 2020

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Commits on Sep 9, 2020

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