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Binning stats/taxonomy summary #99
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Commits on Jun 25, 2020
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🎨 Add kingdom-specific parameters/handling.
🐛 Raise error if exception raised in call_orfs function. 🎨 Change os.stat(...).st_size to os.path.getsize(...)
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🐎🎨 Update methods for MetaBin init
🎨 Change run_binning method in user.py to account for MetaBin init 🎨 Change get_kingdoms method in metagenome.py to account for MetaBin init 🐎 Perform any file parsing once rather than per func.
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🎨🐛 Update output summary columns.
🐛 Change NCBI.CANONICAL_RANKS list to instance list 🎨 Update recursive_dbscan.py func add_metrics marker lookup methods for better readability 🎨 Remove output summary columns markers, duplicate_markers 🎨 Calculate completeness and purity within metabin_stats func
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