[save] move project to git

Arduino/Arduino.ino

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+/*
+  Dual - Arduino
+ 
+ ---
+ Commands exemples
+ 
+ setMode:1:OUT
+ setMode:12:IN
+ 
+ ---
+ Notes
+ 
+ Minimal value for dm: 300µs
+ 
+ */
+
+// === DEFINITIONS ===============================================
+
+int id = 1;
+boolean isRunning = false;
+
+int pDir = 8;
+int pStep = 9;
+int pBottom = 19;
+int pTop = 20;
+int period = 1000;
+
+// === SETUP =====================================================
+
+void setup() {                
+
+  // Serial communication  
+  Serial.begin(115200);
+  Serial.setTimeout(0);
+
+}
+
+// === LOOP ======================================================
+
+void loop() {
+
+  // === Manage inputs ===========================================
+
+  if (Serial.available()) {   
+
+    // Get serial commad string
+    String input = Serial.readString();
+    input.trim();
+
+    // Split serial command
+    char arg1[32]={}, arg2[16]={}, arg3[16]={};
+    for (int i=0, p1=0, p2=0, p3=0, c=1; i<input.length(); i++) { 
+      if (input.charAt(i)== ':') { 
+        c++; 
+        continue; 
+      }
+      switch (c) {
+      case 1: 
+        arg1[p1++] = input.charAt(i); 
+        break;
+      case 2: 
+        arg2[p2++] = input.charAt(i); 
+        break;
+      case 3: 
+        arg3[p3++] = input.charAt(i); 
+        break;
+      }
+    }
+
+    String cmd(arg1);
+    String key(arg2);
+    String val(arg3);
+
+    /*
+    // --- DEBUG ---
+     Serial.println("Command (" + String(cmd.length()) + "): " + cmd);
+     Serial.println("Key (" + String(key.length()) + "):     " + key);
+     Serial.println("Value (" + String(val.length()) + "):   " + val);
+     // -------------
+     */
+
+    // --- IDENTIFIER ---------------------------------------
+    if (cmd.equals("getId")) {
+
+      Serial.println(String(id));
+
+      // --- INFORMATION --------------------------------------
+    } 
+    else if (cmd.equals("getInfo")) {
+
+      Serial.println("----------------------------");
+      Serial.println("Dual #" + String(id));
+      Serial.println("");
+      Serial.println("Pin DIR:" + String(pDir));
+      Serial.println("Pin STEP:" + String(pStep));
+      Serial.println("Period:" + String(period) + "us");
+      Serial.println("----------------------------");
+
+      // --- SET PIN MODE -------------------------------------
+    } 
+    else if (cmd.equals("setMode")) {
+
+      if (val.equals("INPUT")) { 
+        pinMode(key.toInt(), INPUT); 
+      }
+      else if (val.equals("OUTPUT")) { 
+        pinMode(key.toInt(), OUTPUT); 
+      }
+      else if (val.equals("INPUT_PULLUP")) {
+        pinMode(key.toInt(), INPUT_PULLUP);
+      }
+
+      Serial.println("Pin " + key + " set to " + val);
+
+      // --- SET VALUE ----------------------------------------
+    } 
+    else if (cmd.equals("setVal")) {
+
+      digitalWrite(key.toInt(), val.equals("ON")? HIGH : LOW);
+      // Serial.println("Pin " + key + " set to " + val);
+
+      // --- PERIOD -------------------------------------------
+    } 
+    else if (cmd.equals("setPeriod")) {
+
+      period = key.toInt();
+      Serial.println("Period set to " + key + "us");
+
+      // --- RUN ----------------------------------------------
+    } 
+    else if (cmd.equals("run")) {
+
+      isRunning = true;
+      Serial.println("Running");
+
+      // --- STOP ---------------------------------------------
+    } 
+    else if (cmd.equals("stop")) {
+
+      isRunning = false;
+      Serial.println("Stopped (by command)");
+
+    }
+
+    // Flush output
+    Serial.flush();
+
+  }
+
+  // === Actions =================================================
+
+  // --- RUN -------------------------------------------------
+
+  if (isRunning) {
+
+    // --- Checks
+
+    if (digitalRead(pTop)==LOW & digitalRead(pDir)==HIGH) {
+      isRunning = false;
+      Serial.println("[STOP]");
+      Serial.println("Stopped (by top switch)");
+      return;
+    }
+
+    if (digitalRead(pBottom)==LOW & digitalRead(pDir)==LOW) { 
+      isRunning = false;
+      Serial.println("[STOP]");
+      Serial.println("Stopped (by bottom switch)");
+      return;
+    }
+
+    digitalWrite(pStep, HIGH); 
+    delayMicroseconds(period/2);
+
+    digitalWrite(pStep, LOW);
+    delayMicroseconds(period/2);
+
+  }
+
+}
+
+

Dual_GUI/BLBR.protocol

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+#
+# PROTOCOL: BUFFER - LEFT - BUFFER - RIGHT 
+#
+
+# --- Header ------------------------------------
+
+print:Starting protocol BLBR
+data:create directory
+camera:start
+
+# --- BUFFER CYCLE ------------------------------
+
+# --- Fill
+camera:comment:Filling (buffer cycle)
+switch:L:Buffer
+switch:R:Buffer
+switch:T:Trash
+wait:1000
+run:down:1250
+
+# --- Infuse
+wait:1000
+camera:comment:Infusing (buffer cycle)
+switch:L:Circuit
+switch:R:Circuit
+switch:T:Circuit
+wait:1000
+run:up:10000
+
+# --- LEFT CYCLE --------------------------------
+
+# --- Fill
+wait:1000
+camera:comment:Filling (left cycle)
+switch:L:Stimulus
+switch:R:Buffer
+switch:T:Trash
+wait:1000
+run:down:1250
+
+# --- Infuse
+wait:1000
+camera:comment:Infusing (left cycle)
+switch:L:Circuit
+switch:R:Circuit
+switch:T:Circuit
+wait:1000
+run:up:10000
+
+# --- BUFFER CYCLE ------------------------------
+
+# --- Fill
+wait:1000
+camera:comment:Filling (buffer cycle)
+switch:L:Buffer
+switch:R:Buffer
+switch:T:Trash
+wait:1000
+run:down:1250
+
+# --- Infuse
+wait:1000
+camera:comment:Infusing (buffer cycle)
+switch:L:Circuit
+switch:R:Circuit
+switch:T:Circuit
+wait:1000
+run:up:10000
+
+# --- RIGHT CYCLE --------------------------------
+
+# --- Fill
+wait:1000
+camera:comment:Filling (right cycle)
+switch:L:Buffer
+switch:R:Stimulus
+switch:T:Trash
+wait:1000
+run:down:1250
+
+# --- Infuse
+wait:1000
+camera:comment:Infusing (right cycle)
+switch:L:Circuit
+switch:R:Circuit
+switch:T:Circuit
+wait:1000
+run:up:10000
+
+# --- Footer ------------------------------------
+
+wait:1000
+camera:stop
+
+# --- Clean
+switch:L:Buffer
+switch:R:Buffer
+switch:T:Trash
+wait:1000
+
+run:down:1250:for:10000
+switch:L:Circuit
+switch:R:Circuit
+switch:T:Circuit
+wait:1000
+run:up:10000
+
+# --- Reset valves in default state
+wait:1000
+switch:L:Buffer
+switch:R:Buffer
+switch:T:Trash
+
+print:Protocol ended

Dual_GUI/BufferCycle.protocol

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+#
+# PROTOCOL: BUFFER CYCLE
+#
+
+# --- Header ------------------------------------
+
+print:Starting buffer cycle
+
+# --- BUFFER CYCLE ------------------------------
+
+# --- Fill
+switch:L:Buffer
+switch:R:Buffer
+switch:T:Trash
+wait:1000
+run:down:1250
+
+# --- Infuse
+wait:1000
+switch:L:Circuit
+switch:R:Circuit
+switch:T:Circuit
+wait:1000
+run:up:10000
+
+# --- Footer ------------------------------------
+
+# Reset valves in default state
+switch:L:Buffer
+switch:R:Buffer
+switch:T:Trash
+
+print:Protocol ended

Dual_GUI/Camera.protocol

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+#
+# PROTOCOL: CAMERA
+#
+# NB: The waiting time is in ms
+#
+
+print:Starting camera acquisition
+data:create directory
+
+camera:start
+wait:10000
+camera:stop
+
+print:Protocol ended