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Merge dev into main for release 2.0 #806

Merged
merged 46 commits into from
Dec 22, 2023
Merged

Merge dev into main for release 2.0 #806

merged 46 commits into from
Dec 22, 2023

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CamStan
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@CamStan CamStan commented Dec 20, 2023

Description

Merge for release tag v2.0

After merged, I'll tag the release and upload a tar and pdf of the docs.

Reminder: For future reference, this needs to be merged as a rebase+merge or a regular vanilla merge with a commit and NOT a squash+merge.

wangvsa and others added 30 commits December 20, 2023 12:26
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Add a new broadcast RPC that requests all servers to return metadata for
the files they own.

This is just the initial commit and RPC is not fully functional yet.
Continuing the work on the metaget_all broadcast RPC.  It's now
functional, but there's still a handful of "ToDo" comments that need to
be addressed.
Fix up the error handling and remove TODO comments from
process_metaget_bcast_rpc().
Implement proper error handling for some of the functions related to the
metaget_all_bcast RPC.  Also fix a few bugs found during testing.
We weren't deleting the child_attr_list array after we were done with
it.
Move the tree-walk code out of the process_metaget_bcast_rpc function
and into its own function in unifyfs_inode.c  Two reasons: 1) we want to
keep all the inode manipulation code in one place for convenience and 2)
it'll make it easier to re-use that code.
We decided "Exit" was too generic for a label, so now it's called
"Exit_Invoke_BMA".
Change unifyfs_invoke_broadcast_metaget_all() to also walk the local
tree and include file metadata with the results returned from the RPC
call.
Fix a case where we could incorrectly return ENOMEM even though the
malloc() succeeded.  Also cleaned up several comments.
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
…pose

Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Fix a warning about a write() call having too small a buffer for the
number of bytes it was supposed to write.

Also replaced a pair of literal numbers that were used repeatedly with
 #defines.

Resolves issue LLNL#782
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Also:
* fix premature heartbeat rpc attempt
MichaelBrim and others added 16 commits December 20, 2023 12:27
This adds batching of client extent sync requests at
each server to try to limit the number of RPCs to the
owner to one-per-server, rather than one-per-client.
It also avoids doing metaget RPCs for the mountpoint.

Also:
* use ABT_rwlock instead of pthread_rwlock_t
* add comparison functions for int/float types to common
* fix misused return code
* fix free() of uninitialized margo bulk buf pointers
* remove last vestiges of MPI in server
* remove last vestiges of MDHIM in server
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Newer versions of the OpenSSL library have deprecated the MD5() API
function in favor of the EVP_* functions.  This commit replaces MD5()
with EVP_Digest().

Note: The new function generates the same hash values as the old
function.
Add a check in the configure script to make sure the OpenSSL library
does have the EVP_Digest() function that we now need.
Newer versions of the OpenSSL library have deprecated the MD5 API
functions in favor of the EVP_* functions.  This commit is essentially
the same as c9516ac, but for the unifyfs-stage util.
Read the Docs has moved to a yaml file format that is needed to
continue building our docs in the future. This adds that file.

This enables fail_on_warning to check for rst syntax errors when
building. Builds for pull requests has also been enabled to add a
status check to open pull requests. PR builds will be skipped if
there are no changes to the docs. These features can easily be
disabled if they don't work as desired.
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Signed-off-by: Chen Wang <wangvsa@gmail.com>
Add OPENSSL_CFLAGS and OPENSSL_LIBS to the UNIFYFS_COMMON_BASE_FLAGS and
UNIFYFS_COMMON_BASE_LIBS variables, respectively.

Fixes issue LLNL#792
* replace server pids pthread mutex/cond with ABT versions
* add margo_state_dump() on client-server or server-server failures
  (currently commented out)
* add a 'bootstrap complete' broadcast rpc after rank 0 sees all
  servers have reported
* fix function declaration for unifyfs_invoke_broadcast_extents()
Update sphinx version and fix resulting conf.py build errors.
(language and extra css files)

Add sphinx todo extension

Add requirements.in file to list top-level docs dependencies.

Have rtd install pip-tools and use pip-compile to always generate an
updated requirements file in the rtd build output.

Add the requirements.txt generated by pip-compile to pin this version
of the docs as a reproducible build.

Note: When wanting to pin a new docs build, copy the results of
pip-compile from the build logs and overwrite the existing
requirements.txt
Add UnifyFS videos to Overview page. For ECP Tutorial, also include
the slides to download and a section on changes since the tutorial.

Add small section on option to use LD_PRELOAD when an application
does not need to be rebuilt.

Minor fixes
The tutorial download image for the slides did not come through
in the original PR. Trying again.
Update Gitlab CI environments, dependencies, and jobs to reflect
what UnifyFS now uses, as well as what is now available on the
testing systems.
Update conf.py versions.

Pin a new reproducible build by updating versions of doc dependencies
@CamStan
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CamStan commented Dec 22, 2023

@adammoody, this is ready to merge.

@adammoody adammoody merged commit 5d59599 into LLNL:main Dec 22, 2023
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5 participants