More testing #1220
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| name: firecrown-ci | |
| on: | |
| push: | |
| branches: | |
| - 'master' | |
| pull_request: | |
| branches: | |
| - '*' | |
| schedule: | |
| - cron: '47 1 * * *' | |
| jobs: | |
| firecrown-miniforge: | |
| name: Firecrown (${{ matrix.os }}, python-${{ matrix.python-version }}, Miniforge) | |
| runs-on: ${{ matrix.os }}-latest | |
| strategy: | |
| matrix: | |
| os: ["ubuntu", "macos"] | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup miniforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: firecrown_developer | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| show-channel-urls: true | |
| use-mamba: true | |
| - name: Cache date | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: miniforge-${{ runner.os }}--${{ runner.arch }}--python-${{ matrix.python-version }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('environment.yml') }}-${{ env.CACHE_NUMBER }} | |
| env: | |
| CACHE_NUMBER: 0 | |
| id: cache | |
| - name: Update environment | |
| run: | | |
| conda env update -q -v -n firecrown_developer -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Setting up Firecrown | |
| shell: bash -l {0} | |
| run: | | |
| export FIRECROWN_DIR=${PWD} | |
| conda env config vars set FIRECROWN_DIR=${FIRECROWN_DIR} | |
| conda activate firecrown_developer | |
| pip install --no-deps -e . | |
| - name: Setting up CosmoSIS | |
| shell: bash -l {0} | |
| run: | | |
| source ${CONDA_PREFIX}/bin/cosmosis-configure | |
| pushd ${CONDA_PREFIX} | |
| cosmosis-build-standard-library | |
| export CSL_DIR=${PWD}/cosmosis-standard-library | |
| conda env config vars set CSL_DIR=${CSL_DIR} | |
| conda activate firecrown_developer | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Setting up Cobaya | |
| shell: bash -l {0} | |
| run: python -m pip install cobaya | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Ensure clear Jupyter Notebooks | |
| uses: ResearchSoftwareActions/EnsureCleanNotebooksAction@1.1 | |
| - name: Running black check | |
| shell: bash -l {0} | |
| run: | | |
| black --check firecrown | |
| black --check tests | |
| black --check examples | |
| - name: Running flake8 | |
| shell: bash -l {0} | |
| run: | | |
| flake8 firecrown | |
| flake8 examples | |
| flake8 tests | |
| - name: Running mypy | |
| shell: bash -l {0} | |
| run: | | |
| mypy -p firecrown --ignore-missing-imports | |
| mypy -p examples --ignore-missing-imports | |
| mypy -p tests --ignore-missing-imports | |
| - name: Running pylint | |
| shell: bash -l {0} | |
| run: | | |
| pylint --rcfile tests/pylintrc tests | |
| pylint --rcfile firecrown/models/pylintrc firecrown/models | |
| pylint firecrown/connector | |
| pylint firecrown/*.py | |
| pylint firecrown/likelihood/*.py | |
| pylint firecrown/likelihood/gauss_family/*.py | |
| - name: Running pytest | |
| shell: bash -l {0} | |
| run: python -m pytest -vv | |
| - name: Running example - cosmosis - cosmic-shear | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/cosmicshear | |
| python generate_cosmicshear_data.py | |
| cosmosis cosmicshear.ini | |
| - name: Running example - cosmosis - des-y1-3x2pt | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cosmosis des_y1_3x2pt.ini | |
| - name: Running example - cosmosis - des-y1-3x2pt-PT | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cosmosis des_y1_3x2pt_PT.ini | |
| - name: Running example - cobaya - des-y1-3x2pt | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cobaya-run cobaya_evaluate.yaml | |
| - name: Running example - cobaya - des-y1-3x2pt-PT | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| cobaya-run cobaya_evaluate_PT.yaml | |
| - name: Running example - NumCosmo - des-y1-3x2pt | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| python numcosmo_run.py | |
| - name: Running example - NumCosmo - des-y1-3x2pt-PT | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/des_y1_3x2pt | |
| python numcosmo_run_PT.py | |
| - name: Running example - cosmosis - srd_sn | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/srd_sn | |
| cosmosis sn_srd.ini | |
| - name: Running example - NumCosmo - srd_sn | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/srd_sn | |
| python numcosmo_run.py | |
| - name: Running example - cosmosis - cluster_number_counts | |
| shell: bash -l {0} | |
| run: | | |
| cd examples/cluster_number_counts | |
| python generate_rich_mean_mass_sacc_data.py | |
| cosmosis cluster_counts_redshift_richness.ini | |
| cosmosis cluster_mean_mass_redshift_richness.ini | |
| cosmosis cluster_counts_mean_mass_redshift_richness.ini | |
| - name: Code coverage | |
| if: ${{ (matrix.os == 'ubuntu') && (matrix.python-version == '3.11') }} | |
| shell: bash -l {0} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| python -m pip install --no-input coveralls | |
| coverage run --source=firecrown -m pytest tests/ | |
| coveralls --service=github | |