1.6.0

• #169, Added an option for FASTQ - level outputs to be generated by demux. This is done with the flag "-q" followed by a directory path where files will be generated
• #178, In the case of a sample not having enriched peptides, enrich will now add a space to the empty file. This allows for better compatability with deconv through Qiime2.
• #137, Added an option for enrich to drop replicates with low raw read counts. This is done with the flag "-l" or "--low_raw_reads". If this functionality is invoked, dropped replicates will not be considered in the enrichment process, and the dropped replicates will be reported in the enrichment failure reasons file under "Removed Replicates": each line will contain the replicates removed from a sample.
• #131, Enrich now reports which replicates caused a raw read count threshold failure; and identifies if a replicate failed the maximum or minimum threshold.
• #161, Added a flag to deconv that allows the user to specify what string is expected at the end of each file containing enriched peptides (set to "_enriched.txt" by default). If a file without does not end in the string that was specified, deconv skips over that file.
• #149, Added feature to info that generates a matrix of average counts given replicates. Two new flags must be included in order to use this feature: --rep_names and --get_avgs. --rep_names requires an input file with the names of the replicates that the user wants to generate a matrix of average counts for. --get_avgs requires and output file name where the matrix will be stored.