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Additional diversity metrics #21

Merged
merged 87 commits into from
Apr 4, 2024
Merged

Additional diversity metrics #21

merged 87 commits into from
Apr 4, 2024

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TheOafidian
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  • Add support for different alpha diversity metrics and plotting a series of them (add_alphas and tacoplot_alphas)
  • Add aitchison distance as a possibility for ordination
  • Allow ordering of tacoplot_stack using an optional argument
  • Add optional statistical tests to tacoplot_ord (might still be beter ones out there, but now there's a framework to add these)
  • Exporting to biom format with to_biom
  • Exporting ASV sequences with to_fasta

TheOafidian and others added 30 commits November 8, 2023 12:30
deleting joss directory from wrong branch
Improve the function documentation for functions in
adders_abundances.R and adders_samples.R.
@TheOafidian TheOafidian merged commit eb9da04 into master Apr 4, 2024
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3 participants