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Andrew Wilkey edited this page Apr 9, 2019 · 1 revision

Ranges are displayed as bars alongside the chromosome bar or as borders draw within the chromosome bar. A sequence feature is designated a range if its section sets glyph=range or

Option Default Description
color red (color) Color to use when drawing positions
transparent 0 (boolean) add transparency to glyph
width 5 width of glyph in px
offset 0 number of px to offset glyph from backbone, -0 or less draws on the left
enable_pileup 1 (boolean) Offset glyph if it would occupy the same space as another of this type.
pileup_gap 0 Number of px past edge of overlapped glyph to draw
draw_label 1 (boolean) 1 = draw centromere label
font_face fontDefault Font face to use for centromere label
font_size 6 Size of label in pt
label_offset 0 Start labels this many pixels right of glyph (negative for left)
label_color gray30 Color to use for labels

The following options have been added from the legacy format:

Option Default Description
border 0 (boolean) Draw a border around the feature.
border_width 2 Width of a drawn border in px
border_color black color of drawn border
transparent_percent 0.6 Percent transparency from 0-1
hide_label_overlap 0 (boolean) hide labels if they overlap others
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