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Repositories
- idemuxcpp Public
iDemux is an all-in-one command line tool that can be used for both demultiplexing and error correction of FASTQ files. It enables demultiplexing of i1 inline barcodes of Lexogen’s QuantSeq-Pool as well as demultiplexing of i7 and/or i5 indices of any other RNA-Seq library prep. iDemux can also be used for superior error correction of RNA-Seq li…
- corall_analysis Public
Standard analysis routine for samples generated with Corall and Corall v2 library preparation kit.
- SIRVsuite Public
SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.
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- quantseqpool_analysis Public
Standard analysis routine for samples that were generated with Lexogen's QuantSeq pool library preparation kit.
- idemux Public
Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.
- sars-cov-2_analysis Public
An analysis script routine to assess if samples that were prepared with Lexogen's barcoded targeted QuantSeq Flex library preparation contain copies of the SARS-CoV-2 virus.