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updating GenomeScope2 parameters explanation
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LiaOb21 committed Jul 17, 2024
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Expand Up @@ -106,6 +106,8 @@ For the parameter `cs` you must pay attention to your genome size and repetitive

The parameter `-p` for genomescope sets the ploidy of the model for GenomeScope to use. See [genomescope2 repo](https://github.com/tbenavi1/genomescope2.0) for further details.

The parameter `-l` for genomescope sets the estimated coverage of the 1n peak. See [genomescope2 repo](https://github.com/tbenavi1/genomescope2.0) for further details.

### :ear_of_rice: 1. Example of suitable parameters for barley in our testing (genome size ~4.2 Gbp, 75% of repeats):

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