Release v0.10.2 #1542
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: libEnsemble-CI | |
| on: | |
| pull_request: | |
| types: | |
| - ready_for_review | |
| - opened | |
| - reopened | |
| - synchronize | |
| jobs: | |
| test-libE: | |
| if: '! github.event.pull_request.draft' | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| mpi-version: [mpich] | |
| python-version: [3.8, 3.9, "3.10", "3.11"] | |
| comms-type: [m, l] | |
| include: | |
| - os: macos-latest | |
| python-version: 3.9 | |
| mpi-version: "mpich=4.0.3" | |
| comms-type: m | |
| - os: macos-latest | |
| python-version: 3.9 | |
| mpi-version: "mpich=4.0.3" | |
| comms-type: l | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| mpi-version: "mpich" | |
| comms-type: t | |
| # - os: ubuntu-latest | |
| # mpi-version: "openmpi" | |
| # python-version: "3.10" | |
| # comms-type: l | |
| # - os: windows-latest | |
| # python-version: "3.10" | |
| # comms-type: l | |
| # mpi-version: "msmpi" | |
| # - os: windows-latest | |
| # python-version: "3.10" | |
| # comms-type: m | |
| # mpi-version: "msmpi" | |
| env: | |
| HYDRA_LAUNCHER: "fork" | |
| TERM: xterm-256color | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup conda - Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: condaenv | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| channel-priority: flexible | |
| auto-update-conda: true | |
| - uses: actions/cache/restore@v3 | |
| name: Restore cached dependencies | |
| id: cache | |
| if: matrix.os == 'ubuntu-latest' | |
| with: | |
| path: | | |
| /home/runner/work/libensemble/libensemble/heffte/build/ | |
| /home/runner/.local | |
| /usr/share/miniconda3/envs/condaenv | |
| /usr/share/miniconda3/bin | |
| /usr/share/miniconda3/lib | |
| /usr/share/miniconda3/include | |
| key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | |
| - name: Force-update certifi | |
| run: | | |
| python --version | |
| pip install -I --upgrade certifi | |
| # - name: Windows - Add clang path to $PATH env | |
| # shell: bash | |
| # if: matrix.os == 'windows-latest' | |
| # run: | | |
| # echo "PATH=$PATH:C:\msys64\mingw64\bin" >> $GITHUB_ENV | |
| # echo "PATH=$PATH:C:\Program Files (x86)\Microsoft Visual Studio 12.0\VC\bin\amd64" >> $GITHUB_ENV | |
| - name: Install Ubuntu compilers | |
| if: matrix.os == 'ubuntu-latest' | |
| run: conda install gcc_linux-64 | |
| # Roundabout solution on macos for proper linking with mpicc | |
| - name: Install macOS compilers and older SDK | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.15.sdk.tar.xz | |
| mkdir ../sdk; tar xf MacOSX10.15.sdk.tar.xz -C ../sdk | |
| conda install clang_osx-64 | |
| # - name: Setup MPI (${{ matrix.mpi-version }}) | |
| # uses: mpi4py/setup-mpi@v1 | |
| # if: matrix.os == 'windows-latest' | |
| # with: | |
| # mpi: ${{ matrix.mpi-version }} | |
| # - name: Install mpi4py on Windows | |
| # if: matrix.os == 'windows-latest' | |
| # run: pip install mpi4py | |
| - name: Install mpi4py and MPI from conda | |
| if: matrix.python-version != '3.10' && matrix.os != 'windows-latest' | |
| run: | | |
| conda install ${{ matrix.mpi-version }} | |
| conda install mpi4py | |
| - name: Install mpi4py from pip, MPI from conda | |
| if: matrix.python-version == '3.10' && matrix.os != 'windows-latest' | |
| run: | | |
| conda install ${{ matrix.mpi-version }} | |
| pip install mpi4py | |
| - name: Install generator dependencies | |
| if: matrix.os != 'windows-latest' && steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install --upgrade pip | |
| conda env update --file install/gen_deps_environment.yml | |
| pip install ax-platform==0.2.8 | |
| - name: Install surmise | |
| if: matrix.os != 'macos-latest' && steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| pip install --upgrade git+https://github.com/surmising/surmise.git@develop | |
| - name: Build ytopt and dependencies | |
| if: matrix.python-version != '3.11' && matrix.os != 'windows-latest' && matrix.os != 'macos-latest' | |
| run: | | |
| pip install scikit-learn==1.1.2 | |
| pip install pandas==1.5.3 | |
| pip install ConfigSpace | |
| pip install "ray[default]" | |
| git clone https://github.com/ytopt-team/scikit-optimize.git | |
| cd scikit-optimize | |
| pip install . | |
| cd .. | |
| git clone -b version1 https://github.com/ytopt-team/autotune.git | |
| cd autotune | |
| pip install . | |
| cd .. | |
| git clone -b main https://github.com/ytopt-team/ytopt.git | |
| cd ytopt | |
| pip install . | |
| cd .. | |
| # - name: Install some generator dependencies on Windows | |
| # if: matrix.os == 'windows-latest' | |
| # run: | | |
| # python -m pip install --upgrade pip | |
| # conda install nlopt | |
| # conda install scipy | |
| # pip install mpmath | |
| - name: Install generator dependencies for Ubuntu tests | |
| if: matrix.os == 'ubuntu-latest' && steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| conda install octave | |
| sudo apt-get install bc | |
| # begin heffte build and dependencies | |
| sudo apt install libfftw3-dev | |
| git clone https://github.com/icl-utk-edu/heffte.git | |
| mkdir heffte/build | |
| cd heffte/build | |
| pwd | |
| cmake -D CMAKE_BUILD_TYPE=Release -D BUILD_SHARED_LIBS=ON -D CMAKE_INSTALL_PREFIX=./ -D Heffte_ENABLE_AVX=ON -D Heffte_ENABLE_FFTW=ON ../ | |
| make -j 4 | |
| make install | |
| cp ./benchmarks/speed3d_c2c ../../libensemble/tests/regression_tests/ | |
| # end heffte build and dependencies | |
| # pip install dragonfly-opt | |
| # pip install git+https://github.com/dragonfly/dragonfly.git | |
| pip install git+https://github.com/jlnav/dragonfly.git@fix/remove_npobject | |
| pip install scikit-build packaging Tasmanian --user | |
| - name: Copy heffte exe on cache-hit | |
| if: matrix.os == 'ubuntu-latest' && steps.cache.outputs.cache-hit != 'false' | |
| run: | | |
| cd /home/runner/work/libensemble/libensemble | |
| cp ./heffte/build/benchmarks/speed3d_c2c ./libensemble/tests/regression_tests/ | |
| - name: Install other testing dependencies | |
| run: | | |
| conda install pyzmq | |
| pip install -r install/testing_requirements.txt | |
| pip install -r install/misc_feature_requirements.txt | |
| git clone https://github.com/argonne-lcf/balsam.git | |
| sed -i -e "s/pyzmq>=22.1.0,<23.0.0/pyzmq>=23.0.0,<24.0.0/" ./balsam/setup.cfg | |
| cd balsam; pip install -e .; cd .. | |
| - uses: actions/cache/save@v3 | |
| name: Save dependencies to cache | |
| if: matrix.os == 'ubuntu-latest' | |
| with: | |
| path: | | |
| /home/runner/work/libensemble/libensemble/heffte/build/ | |
| /home/runner/.local | |
| /usr/share/miniconda3/envs/condaenv | |
| /usr/share/miniconda3/bin | |
| /usr/share/miniconda3/lib | |
| /usr/share/miniconda3/include | |
| key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | |
| - name: Install libEnsemble, flake8, lock environment | |
| run: | | |
| pip install -e . | |
| flake8 libensemble | |
| - name: Activate API unit test if using mpich | |
| if: matrix.mpi-version == 'mpich' | |
| run: | | |
| mv libensemble/tests/unit_tests/mpich-only_test_ensemble.py libensemble/tests/unit_tests/test_ensemble.py | |
| - name: Remove ytopt-heffte test on Python 3.11 (easy way) | |
| if: matrix.python-version == '3.11' | |
| run: | | |
| rm ./libensemble/tests/regression_tests/test_ytopt_heffte.py | |
| - name: Run extensive tests, Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| ./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }} | |
| # - name: Run simple tests, Windows | |
| # if: matrix.os == 'windows-latest' | |
| # run: | | |
| # ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | |
| - name: Run extensive tests, macOS | |
| if: matrix.os == 'macos-latest' | |
| env: | |
| CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.15.sdk | |
| run: | | |
| ./libensemble/tests/run-tests.sh -e -A "-W error" -z -${{ matrix.comms-type }} | |
| - name: Merge coverage, run Coveralls | |
| env: | |
| COVERALLS_PARALLEL: true | |
| run: | | |
| mv libensemble/tests/.cov* . | |
| coveralls --service=github | |
| coveralls: | |
| name: Notify coveralls of all jobs completing | |
| needs: [test-libE] | |
| if: '! github.event.pull_request.draft' | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls | |
| coveralls --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| spellcheck: | |
| name: Spellcheck release branch | |
| if: contains(github.base_ref, 'main') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: crate-ci/typos@v1.0.4 |