Placeholder PR for JOSS diff #33
Workflow file for this run
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| name: libEnsemble-simple-CI | |
| on: | |
| pull_request: | |
| types: | |
| - ready_for_review | |
| - opened | |
| - reopened | |
| - synchronize | |
| jobs: | |
| test-libE: | |
| if: '! github.event.pull_request.draft' | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| mpi-version: [mpich] | |
| python-version: [3.9, "3.10", "3.11"] | |
| comms-type: [m, l] | |
| include: | |
| - os: macos-latest | |
| python-version: 3.9 | |
| mpi-version: "mpich=4.0.3" | |
| comms-type: m | |
| - os: macos-latest | |
| python-version: 3.9 | |
| mpi-version: "mpich=4.0.3" | |
| comms-type: l | |
| env: | |
| HYDRA_LAUNCHER: "fork" | |
| TERM: xterm-256color | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup conda - Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: condaenv | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| channel-priority: flexible | |
| auto-update-conda: true | |
| - uses: actions/cache/restore@v3 | |
| name: Restore cached dependencies | |
| id: cache | |
| if: matrix.os == 'ubuntu-latest' | |
| with: | |
| path: | | |
| /home/runner/.local | |
| /usr/share/miniconda3/envs/condaenv | |
| /usr/share/miniconda3/bin | |
| /usr/share/miniconda3/lib | |
| /usr/share/miniconda3/include | |
| key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | |
| - name: Force-update certifi | |
| run: | | |
| python --version | |
| pip install -I --upgrade certifi | |
| - name: Install Ubuntu compilers | |
| if: matrix.os == 'ubuntu-latest' | |
| run: conda install gcc_linux-64 | |
| # Roundabout solution on macos for proper linking with mpicc | |
| - name: Install macOS compilers and older SDK | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| wget https://github.com/phracker/MacOSX-SDKs/releases/download/11.3/MacOSX10.15.sdk.tar.xz | |
| mkdir ../sdk; tar xf MacOSX10.15.sdk.tar.xz -C ../sdk | |
| conda install clang_osx-64 | |
| - name: Install basic testing/feature dependencies | |
| run: | | |
| pip install -r install/testing_requirements.txt | |
| pip install -r install/misc_feature_requirements.txt | |
| - name: Install mpi4py and MPI from conda | |
| if: (matrix.python-version != '3.10' && matrix.os == 'ubuntu-latest') || matrix.os == 'macos-latest' | |
| run: | | |
| conda install mpi4py ${{ matrix.mpi-version }} | |
| - name: Install mpi4py from pip, MPI from conda, get testing/feature deps | |
| if: matrix.python-version == '3.10' && matrix.os == 'ubuntu-latest' | |
| run: | | |
| conda install ${{ matrix.mpi-version }} | |
| pip install mpi4py | |
| - name: Install generator dependencies | |
| if: matrix.os != 'windows-latest' && steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install mpmath | |
| conda install numpy nlopt scipy | |
| - uses: actions/cache/save@v3 | |
| name: Save dependencies to cache | |
| if: matrix.os == 'ubuntu-latest' | |
| with: | |
| path: | | |
| /home/runner/.local | |
| /usr/share/miniconda3/envs/condaenv | |
| /usr/share/miniconda3/bin | |
| /usr/share/miniconda3/lib | |
| /usr/share/miniconda3/include | |
| key: libe-${{ github.ref_name }}-${{ matrix.python-version }}-${{ matrix.comms-type }} | |
| - name: Install libEnsemble, flake8, lock environment | |
| run: | | |
| pip install -e . | |
| flake8 libensemble | |
| - name: Run simple tests, Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | |
| - name: Run simple tests, macOS | |
| if: matrix.os == 'macos-latest' | |
| env: | |
| CONDA_BUILD_SYSROOT: /Users/runner/work/libensemble/sdk/MacOSX10.15.sdk | |
| run: | | |
| ./libensemble/tests/run-tests.sh -A "-W error" -z -${{ matrix.comms-type }} | |
| - name: Merge coverage, run Coveralls | |
| env: | |
| COVERALLS_PARALLEL: true | |
| run: | | |
| mv libensemble/tests/.cov* . | |
| coveralls --service=github | |
| coveralls: | |
| name: Notify coveralls of all jobs completing | |
| needs: [test-libE] | |
| if: '! github.event.pull_request.draft' | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls | |
| coveralls --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| spellcheck: | |
| name: Spellcheck release branch | |
| if: contains(github.base_ref, 'develop') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: crate-ci/typos@v1.16.18 |