Request 50GB for the counts step on clusters by default, rather than …

…the huge 140GB. This is a temporary improvement before fully addressing #73
LieberInstitute · Jun 16, 2021 · 0c0962a · 0c0962a
1 parent ff06a3f
commit 0c0962a
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Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/conf/docker_sge.config b/conf/docker_sge.config
@@ -340,7 +340,7 @@ process {
     withName: CountObjects {
         cpus = 2
         penv = 'local'
-        memory = 140.GB
+        memory = 50.GB
         time = { 8.h * task.attempt }
         clusterOptions = '-l h_fsize=100G'
 

diff --git a/conf/docker_slurm.config b/conf/docker_slurm.config
@@ -279,7 +279,7 @@ process {
     }
     withName: CountObjects {
         cpus = 2
-        memory = 140.GB
+        memory = 50.GB
         time = { 8.h * task.attempt }
         container = 'libddocker/r_3.6.1_bioc'
     }

diff --git a/conf/jhpce.config b/conf/jhpce.config
@@ -268,7 +268,7 @@ process {
     cpus = 2
     penv = 'local'
     module = 'conda_R/4.0'
-    clusterOptions = '-l mf=70G,h_vmem=70G,h_fsize=100G -R y'
+    clusterOptions = '-l mf=25G,h_vmem=25G,h_fsize=100G -R y'
   }
   withName: CoverageObjects {
     cpus = 4

diff --git a/conf/sge.config b/conf/sge.config
@@ -259,7 +259,7 @@ process {
   }
   withName: CountObjects {
     cpus = 2
-    memory = '140.GB'
+    memory = '50.GB'
     time = { 8.h * task.attempt }
     clusterOptions = '-l h_fsize=100G'
   }

diff --git a/conf/slurm.config b/conf/slurm.config
@@ -244,7 +244,7 @@ process {
   }
   withName: CountObjects {
     cpus = 2
-    memory = 140.GB
+    memory = 50.GB
     time = { 8.h * task.attempt }
   }
   withName: CoverageObjects {