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Fix duplicate vignette chunk labels
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Nick-Eagles committed Feb 21, 2024
1 parent abc6087 commit ff49a2e
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions vignettes/multi_gene_plots.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -89,7 +89,7 @@ and instead focuses on how each gene varies spatially, weighting each gene equal

Let's plot all four white matter genes using this method.

```{r "single_gene"}
```{r "multi_gene_z"}
vis_gene(spe, geneid = white_matter_genes, multi_gene_method = "z_score")
```

Expand All @@ -105,7 +105,7 @@ higher values in the plot to represent areas of higher expression of the feature
this leads to the intuitive result that "expression" is higher in white matter for white-matter
genes, which is not otherwise guaranteed (the "sign" of PCs is arbitary)!

```{r "single_gene"}
```{r "multi_gene_pca"}
vis_gene(spe, geneid = white_matter_genes, multi_gene_method = "pca")
```

Expand All @@ -120,7 +120,7 @@ and 1, which is not visually informative.

The white-matter example is thus poor due to lack of sparsity and low number of genes:

```{r "single_gene"}
```{r "multi_gene_sparsity"}
vis_gene(spe, geneid = white_matter_genes, multi_gene_method = "sparsity")
```

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