fix flushing loggers

.github/workflows/ci-testing.yml

@@ -28,7 +28,7 @@ jobs:
             requires: 'minimal'
 
     # Timeout: https://stackoverflow.com/a/59076067/4521646
-    timeout-minutes: 30
+    timeout-minutes: 15
     steps:
     - uses: actions/checkout@v2
     - name: Set up Python ${{ matrix.python-version }}

CHANGELOG.md

@@ -34,7 +34,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 
 ### Fixed
 
-- 
+- Fixed loggers - flushing last logged metrics even before continue, e.g. `trainer.test()` results ([#1459](https://github.com/PyTorchLightning/pytorch-lightning/pull/1459))
 
 - 
 

pytorch_lightning/loggers/base.py

@@ -48,7 +48,7 @@ def __init__(
             `LightningLoggerBase.agg_and_log_metrics` method.
         """
         self._rank = 0
-        self._prev_step = -1
+        self._prev_step: int = -1
         self._metrics_to_agg: List[Dict[str, float]] = []
         self._agg_key_funcs = agg_key_funcs if agg_key_funcs else {}
         self._agg_default_func = agg_default_func
@@ -98,15 +98,15 @@ def _aggregate_metrics(
             return step, None
 
         # compute the metrics
-        agg_step, agg_mets = self._finalize_agg_metrics()
+        agg_step, agg_mets = self._reduce_agg_metrics()
 
         # as new step received reset accumulator
         self._metrics_to_agg = [metrics]
         self._prev_step = step
         return agg_step, agg_mets
 
-    def _finalize_agg_metrics(self):
-        """Aggregate accumulated metrics. This shall be called in close."""
+    def _reduce_agg_metrics(self):
+        """Aggregate accumulated metrics."""
         # compute the metrics
         if not self._metrics_to_agg:
             agg_mets = None
@@ -116,6 +116,14 @@ def _finalize_agg_metrics(self):
             agg_mets = merge_dicts(self._metrics_to_agg, self._agg_key_funcs, self._agg_default_func)
         return self._prev_step, agg_mets
 
+    def _finalize_agg_metrics(self):
+        """This shall be called before save/close."""
+        agg_step, metrics_to_log = self._reduce_agg_metrics()
+        self._metrics_to_agg = []
+
+        if metrics_to_log is not None:
+            self.log_metrics(metrics=metrics_to_log, step=agg_step)
+
     def agg_and_log_metrics(self, metrics: Dict[str, float], step: Optional[int] = None):
         """Aggregates and records metrics.
         This method doesn't log the passed metrics instantaneously, but instead
@@ -219,22 +227,19 @@ def log_hyperparams(self, params: argparse.Namespace):
 
     def save(self) -> None:
         """Save log data."""
-        pass
+        self._finalize_agg_metrics()
 
     def finalize(self, status: str) -> None:
         """Do any processing that is necessary to finalize an experiment.
 
         Args:
             status: Status that the experiment finished with (e.g. success, failed, aborted)
         """
-        pass
+        self.save()
 
     def close(self) -> None:
         """Do any cleanup that is necessary to close an experiment."""
-        agg_step, metrics_to_log = self._finalize_agg_metrics()
-
-        if metrics_to_log is not None:
-            self.log_metrics(metrics=metrics_to_log, step=agg_step)
+        self.save()
 
     @property
     def rank(self) -> int:
@@ -292,7 +297,6 @@ def close(self) -> None:
 
     @LightningLoggerBase.rank.setter
     def rank(self, value: int) -> None:
-        self._rank = value
         for logger in self._logger_iterable:
             logger.rank = value
 

pytorch_lightning/loggers/comet.py

@@ -36,10 +36,15 @@ class CometLogger(LightningLoggerBase):
     Log using `comet.ml <https://www.comet.ml>`_.
     """
 
-    def __init__(self, api_key: Optional[str] = None, save_dir: Optional[str] = None,
-                 workspace: Optional[str] = None, project_name: Optional[str] = None,
-                 rest_api_key: Optional[str] = None, experiment_name: Optional[str] = None,
-                 experiment_key: Optional[str] = None, **kwargs):
+    def __init__(self,
+                 api_key: Optional[str] = None,
+                 save_dir: Optional[str] = None,
+                 workspace: Optional[str] = None,
+                 project_name: Optional[str] = None,
+                 rest_api_key: Optional[str] = None,
+                 experiment_name: Optional[str] = None,
+                 experiment_key: Optional[str] = None,
+                 **kwargs):
         r"""
 
         Requires either an API Key (online mode) or a local directory path (offline mode)
@@ -118,6 +123,7 @@ def __init__(self, api_key: Optional[str] = None, save_dir: Optional[str] = None
                 self.name = experiment_name
             except TypeError as e:
                 log.exception("Failed to set experiment name for comet.ml logger")
+        self._kwargs = kwargs
 
     @property
     def experiment(self) -> CometBaseExperiment:
@@ -197,7 +203,7 @@ def finalize(self, status: str) -> None:
 
     @property
     def name(self) -> str:
-        return self.experiment.project_name
+        return str(self.experiment.project_name)
 
     @name.setter
     def name(self, value: str) -> None:

pytorch_lightning/loggers/mlflow.py

@@ -23,6 +23,7 @@ def any_lightning_module_function_or_hook(...):
         self.logger.experiment.whatever_ml_flow_supports(...)
 
 """
+import os
 from argparse import Namespace
 from time import time
 from typing import Optional, Dict, Any, Union
@@ -39,10 +40,14 @@ def any_lightning_module_function_or_hook(...):
 
 
 class MLFlowLogger(LightningLoggerBase):
-    def __init__(self, experiment_name: str, tracking_uri: Optional[str] = None,
-                 tags: Dict[str, Any] = None):
-        r"""
+    """MLFLow logger"""
 
+    def __init__(self,
+                 experiment_name: str = 'default',
+                 tracking_uri: Optional[str] = None,
+                 tags: Optional[Dict[str, Any]] = None,
+                 save_dir: Optional[str] = None):
+        r"""
         Logs using MLFlow
 
         Args:
@@ -51,6 +56,8 @@ def __init__(self, experiment_name: str, tracking_uri: Optional[str] = None,
             tags (dict): todo this param
         """
         super().__init__()
+        if not tracking_uri and save_dir:
+            tracking_uri = f'file:{os.sep * 2}{save_dir}'
         self._mlflow_client = MlflowClient(tracking_uri)
         self.experiment_name = experiment_name
         self._run_id = None
@@ -59,7 +66,6 @@ def __init__(self, experiment_name: str, tracking_uri: Optional[str] = None,
     @property
     def experiment(self) -> MlflowClient:
         r"""
-
         Actual mlflow object. To use mlflow features do the following.
 
         Example::
@@ -102,11 +108,9 @@ def log_metrics(self, metrics: Dict[str, float], step: Optional[int] = None) ->
                 continue
             self.experiment.log_metric(self.run_id, k, v, timestamp_ms, step)
 
-    def save(self):
-        pass
-
     @rank_zero_only
     def finalize(self, status: str = 'FINISHED') -> None:
+        super().finalize(status)
         if status == 'success':
             status = 'FINISHED'
         self.experiment.set_terminated(self.run_id, status)

pytorch_lightning/loggers/neptune.py

@@ -29,13 +29,18 @@ class NeptuneLogger(LightningLoggerBase):
     To log experiment data in online mode, NeptuneLogger requries an API key:
     """
 
-    def __init__(self, api_key: Optional[str] = None, project_name: Optional[str] = None,
-                 close_after_fit: Optional[bool] = True, offline_mode: bool = False,
+    def __init__(self,
+                 api_key: Optional[str] = None,
+                 project_name: Optional[str] = None,
+                 close_after_fit: Optional[bool] = True,
+                 offline_mode: bool = True,
                  experiment_name: Optional[str] = None,
-                 upload_source_files: Optional[List[str]] = None, params: Optional[Dict[str, Any]] = None,
-                 properties: Optional[Dict[str, Any]] = None, tags: Optional[List[str]] = None, **kwargs):
+                 upload_source_files: Optional[List[str]] = None,
+                 params: Optional[Dict[str, Any]] = None,
+                 properties: Optional[Dict[str, Any]] = None,
+                 tags: Optional[List[str]] = None,
+                 **kwargs):
         r"""
-
         Initialize a neptune.ai logger.
 
         .. note:: Requires either an API Key (online mode) or a local directory path (offline mode)
@@ -135,8 +140,8 @@ def any_lightning_module_function_or_hook(...):
                 "namespace/project_name" for example "tom/minst-classification".
                 If None, the value of NEPTUNE_PROJECT environment variable will be taken.
                 You need to create the project in https://neptune.ai first.
-            offline_mode: Optional default False. If offline_mode=True no logs will be send
-                to neptune. Usually used for debug purposes.
+            offline_mode: Optional default True. If offline_mode=True no logs will be send
+                to neptune. Usually used for debug and test purposes.
             close_after_fit: Optional default True. If close_after_fit=False the experiment
                 will not be closed after training and additional metrics,
                 images or artifacts can be logged. Also, remember to close the experiment explicitly
@@ -243,6 +248,7 @@ def log_metrics(
 
     @rank_zero_only
     def finalize(self, status: str) -> None:
+        super().finalize(status)
         if self.close_after_fit:
             self.experiment.stop()
 

pytorch_lightning/loggers/tensorboard.py

@@ -14,7 +14,6 @@
 
 class TensorBoardLogger(LightningLoggerBase):
     r"""
-
     Log to local file system in TensorBoard format
 
     Implemented using :class:`torch.utils.tensorboard.SummaryWriter`. Logs are saved to
@@ -40,18 +39,19 @@ class TensorBoardLogger(LightningLoggerBase):
     """
     NAME_CSV_TAGS = 'meta_tags.csv'
 
-    def __init__(
-            self, save_dir: str, name: Optional[str] = "default",
-            version: Optional[Union[int, str]] = None, **kwargs
-    ):
+    def __init__(self,
+                 save_dir: str,
+                 name: Optional[str] = "default",
+                 version: Optional[Union[int, str]] = None,
+                 **kwargs):
         super().__init__()
         self.save_dir = save_dir
         self._name = name
         self._version = version
 
         self._experiment = None
         self.tags = {}
-        self.kwargs = kwargs
+        self._kwargs = kwargs
 
     @property
     def root_dir(self) -> str:
@@ -92,7 +92,7 @@ def experiment(self) -> SummaryWriter:
             return self._experiment
 
         os.makedirs(self.root_dir, exist_ok=True)
-        self._experiment = SummaryWriter(log_dir=self.log_dir, **self.kwargs)
+        self._experiment = SummaryWriter(log_dir=self.log_dir, **self._kwargs)
         return self._experiment
 
     @rank_zero_only
@@ -127,6 +127,7 @@ def log_metrics(self, metrics: Dict[str, float], step: Optional[int] = None) ->
 
     @rank_zero_only
     def save(self) -> None:
+        super().save()
         try:
             self.experiment.flush()
         except AttributeError:

pytorch_lightning/loggers/test_tube.py

@@ -18,10 +18,13 @@ class TestTubeLogger(LightningLoggerBase):
 
     __test__ = False
 
-    def __init__(
-            self, save_dir: str, name: str = "default", description: Optional[str] = None,
-            debug: bool = False, version: Optional[int] = None, create_git_tag: bool = False
-    ):
+    def __init__(self,
+                 save_dir: str,
+                 name: str = "default",
+                 description: Optional[str] = None,
+                 debug: bool = False,
+                 version: Optional[int] = None,
+                 create_git_tag: bool = False):
         r"""
 
         Example
@@ -105,19 +108,22 @@ def log_metrics(self, metrics: Dict[str, float], step: Optional[int] = None) ->
 
     @rank_zero_only
     def save(self) -> None:
+        super().save()
         # TODO: HACK figure out where this is being set to true
         self.experiment.debug = self.debug
         self.experiment.save()
 
     @rank_zero_only
     def finalize(self, status: str) -> None:
+        super().finalize(status)
         # TODO: HACK figure out where this is being set to true
         self.experiment.debug = self.debug
         self.save()
         self.close()
 
     @rank_zero_only
     def close(self) -> None:
+        super().save()
         # TODO: HACK figure out where this is being set to true
         self.experiment.debug = self.debug
         if not self.debug:

pytorch_lightning/loggers/trains.py

@@ -295,11 +295,9 @@ def log_artifact(
             delete_after_upload=delete_after_upload
         )
 
-    def save(self) -> None:
-        pass
-
     @rank_zero_only
     def finalize(self, status: str = None) -> None:
+        # super().finalize(status)
         if self.bypass_mode() or not self._trains:
             return
 

pytorch_lightning/loggers/wandb.py

@@ -46,11 +46,18 @@ class WandbLogger(LightningLoggerBase):
         trainer = Trainer(logger=wandb_logger)
     """
 
-    def __init__(self, name: Optional[str] = None, save_dir: Optional[str] = None,
-                 offline: bool = False, id: Optional[str] = None, anonymous: bool = False,
-                 version: Optional[str] = None, project: Optional[str] = None,
-                 tags: Optional[List[str]] = None, log_model: bool = False,
-                 experiment=None, entity=None):
+    def __init__(self,
+                 name: Optional[str] = None,
+                 save_dir: Optional[str] = None,
+                 offline: bool = False,
+                 id: Optional[str] = None,
+                 anonymous: bool = False,
+                 version: Optional[str] = None,
+                 project: Optional[str] = None,
+                 tags: Optional[List[str]] = None,
+                 log_model: bool = False,
+                 experiment=None,
+                 entity=None):
         super().__init__()
         self._name = name
         self._save_dir = save_dir

pytorch_lightning/trainer/evaluation_loop.py

@@ -370,14 +370,13 @@ def run_evaluation(self, test_mode: bool = False):
 
         # run evaluation
         eval_results = self._evaluate(self.model, dataloaders, max_batches, test_mode)
-        _, prog_bar_metrics, log_metrics, callback_metrics, _ = self.process_output(
-            eval_results)
+        _, prog_bar_metrics, log_metrics, callback_metrics, _ = self.process_output(eval_results)
 
         # add metrics to prog bar
         self.add_tqdm_metrics(prog_bar_metrics)
 
         # log results of test
-        if test_mode and self.proc_rank == 0 and len(callback_metrics) > 0:
+        if test_mode and self.proc_rank == 0:
             print('-' * 80)
             print('TEST RESULTS')
             pprint(callback_metrics)

pytorch_lightning/trainer/trainer.py

@@ -289,8 +289,7 @@ def __init__(
 
         # benchmarking
         self.benchmark = benchmark
-        if benchmark:
-            torch.backends.cudnn.benchmark = True
+        torch.backends.cudnn.benchmark = self.benchmark
 
         # Transfer params
         self.num_nodes = num_nodes