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Filtering units for decoding #807

Merged
merged 311 commits into from
Feb 3, 2024
Merged

Filtering units for decoding #807

merged 311 commits into from
Feb 3, 2024

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edeno
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@edeno edeno commented Jan 27, 2024 •
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Description

Checklist:

  • This PR should be accompanied by a release: (yes/no/unsure)
  • (If release) I have updated the CITATION.cff
  • I have updated the CHANGELOG.md
  • I have added/edited docs/notebooks to reflect the changes

edeno and others added 30 commits December 27, 2023 10:30
@edeno
Merge branch 'master' into decoding-pipeline
5828bea
@edeno
Save initial conditions and discrete transitions
011191e
@edeno @CBroz1
Apply suggestions from code review
5d6dc19 
Co-authored-by: Chris Brozdowski <Chris.Broz@ucsf.edu>
@edeno
Be more specific with import error
a37c51c
@edeno
Remove unneeded comments
a304472
@edeno
Remove incorrect dimension name
b0ba523
@edeno
Project merge_id from SpikeSortingOutput for clarity
ba28472
@edeno @CBroz1
Update src/spyglass/decoding/v0/clusterless.py
c9a0cdc 
Co-authored-by: Chris Brozdowski <Chris.Broz@ucsf.edu>
@edeno @CBroz1
Update src/spyglass/decoding/v0/clusterless.py
d8e883e 
Co-authored-by: Chris Brozdowski <Chris.Broz@ucsf.edu>
@edeno @CBroz1
Update src/spyglass/decoding/v0/clusterless.py
74a50eb 
Co-authored-by: Chris Brozdowski <Chris.Broz@ucsf.edu>
@edeno
Fix linting
3fcbc48
@edeno
Merge branch 'decoding-pipeline' of https://github.com/LorenFrankLab/…
987e024 
…spyglass into decoding-pipeline
@edeno
Update notebooks
87c340a
@edeno
Ignore .pem
5247948
@edeno
Add session as a primary key for Groups
18b3e57
@edeno
Add some helper methods
12e8360
@edeno
Update notebooks
799fbbe
@edeno
Update README.md
0179414
@edeno
Update pyscripts
c483988
@edeno
Update 42_Decoding_Clusterless.ipynb
2fc0e9d
@edeno
Update CHANGELOG.md
f780bd6
@edeno
Add fetch and insert
6c0a2f9
@edeno
Merge branch 'master' into decoding-pipeline
c918569
@edeno
Simplify class conversion
4999c78
@edeno
Do the dictionary conversion of class for the user
935fde8
@edeno
Update CHANGELOG.md
b14ac06
@edeno
Merge branch 'master' into decoding-pipeline
b6ed2ad
@edeno
Update .gitignore
6ff7181
@edeno
Use methods in populate
9e527ce
@edeno
Avoid fetching interval range if not needed
18d7af2
@CBroz1
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CBroz1 commented Feb 1, 2024

Is this on hold pending #812? Should we mark as draft?

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edeno commented Feb 2, 2024

Is this on hold pending #812? Should we mark as draft?

@samuelbray32 's PR should be good to go shortly so I don't think it matters

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Is this on hold pending #812? Should we mark as draft?

@samuelbray32 's PR should be good to go shortly so I don't think it matters

Just running spikesorting on the demo data so I can update and run the tutorial notebook. Should be done this morning.

@edeno edeno requested review from CBroz1 and samuelbray32 February 2, 2024 23:11
@edeno edeno merged commit e8ae471 into master Feb 3, 2024
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@CBroz1 CBroz1 mentioned this pull request Aug 22, 2024
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@samuelbray32 samuelbray32 samuelbray32 approved these changes

@khl02007 khl02007 Awaiting requested review from khl02007

@CBroz1 CBroz1 Awaiting requested review from CBroz1

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Add ability to filter sorted units in decoding Unrecognized keyword in pandas
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@edeno @samuelbray32 @CBroz1 @khl02007