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Fix that test.
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tsalo committed Aug 21, 2020
1 parent f8eee80 commit 43796ee
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion tedana/tests/test_integration.py
Original file line number Diff line number Diff line change
Expand Up @@ -105,11 +105,12 @@ def test_integration_five_echo(skip_integration):
# Test re-running, but use the CLI
out_dir2 = '/tmp/data/five-echo/TED.five-echo-manual'
acc_comps = df.loc[df['classification'] == 'accepted'].index.values
acc_comps = [str(c) for c in acc_comps]
mixing = os.path.join(out_dir, 'ica_mixing.tsv')
t2smap = os.path.join(out_dir, 't2sv.nii.gz')
args = (['-d'] + datalist + ['-e'] + [str(te) for te in echo_times] +
['--out-dir', out_dir2, '--debug', '--verbose',
'--manacc', acc_comps,
'--manacc', *acc_comps,
'--ctab', comptable, '--mix', mixing, '--t2smap', t2smap])
tedana_cli._main(args)

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