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FIX load user-defined mask as expected by plot_adaptive_mask #1079

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merged 1 commit into from
Apr 17, 2024
Merged

FIX load user-defined mask as expected by plot_adaptive_mask #1079

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1 change: 1 addition & 0 deletions tedana/workflows/tedana.py
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Original file line number Diff line number Diff line change
Expand Up @@ -584,6 +584,7 @@
# TODO: add affine check
LGR.info("Using user-defined mask")
RepLGR.info("A user-defined mask was applied to the data.")
mask = utils.reshape_niimg(mask).astype(int)

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elif t2smap and not mask:
LGR.info("Using user-defined T2* map to generate mask")
t2s_limited_sec = utils.reshape_niimg(t2smap)
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