perf

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Hyungro Lee edited this page Feb 12, 2015 · 10 revisions

Metric

time: end - start
input file size
server cpu
memory
hmm version
file system?
Run 3 times and get average
sequential/parallel execution

Environment

four input genomes: /nobackup/
MGEScan 1
MGEScan 2
outputs: /nobackup/test-results/mgescan1
outputs: /nobackup/test-results/mgescan2

Results

hmmsearch2 137 secs
hmmsearch3 22 secs
hmmsearch3 at Darwin 20 secs

MPI Test

chr2L.fa - single node: 28 secs
chr2L.fa - 2 mpi nodes: 29 secs