Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Process gets killed after 1st step of "make_diamond_database" #126

Open
Harpreet525 opened this issue Jun 12, 2024 · 0 comments
Open

Process gets killed after 1st step of "make_diamond_database" #126

Harpreet525 opened this issue Jun 12, 2024 · 0 comments

Comments

@Harpreet525
Copy link

It constructs the diamond database successfully, i have sufficient memory of 1.5Tb per node. But the process of CAT_prepare gets killed in the second step of "make_fastaid2LCAtaxid_file".

Is it possible to start the database construction from the 2nd step onwards. The database is 345 gb and a pain to build again and again after error in first step.

I dont know what the error was as it only showed: line 16 Process killed.

Now i am running with --verbose hoping to find the error.

If possible then provide stepwise construction of database atleast after diamond database is constructed.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant