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48 Open 59 Closed
48 Open 59 Closed
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Issues list

Is directly using DIAMOND to assign taxonomy for reads not recommended?
#138 opened Jan 7, 2025 by HuoJnx
Possible to run RAT alone to perform taxonomic profiling of reads? (--mode r)
#137 opened Dec 6, 2024 by JSSaini
md5sum collision now feasible in FASTA charset
#136 opened Dec 5, 2024 by Artoria2e5
reads.py errors
#135 opened Nov 19, 2024 by sheaster
How to handle species values ending in 'bacterium', sometimes with bin information
#134 opened Oct 29, 2024 by Dries-B
3
Questions Regarding RAT Tool and Contig Processing
#133 opened Oct 11, 2024 by lucianhu
11
potential overcommit on slurm submission
#132 opened Sep 21, 2024 by EricDeveaud
Suggestions for better documentation on RAT inputs
#131 opened Sep 18, 2024 by aoliver44
1
Error in RAT make_tax_table
#130 opened Aug 22, 2024 by jbh2313
1
Updating Bioconda Package
#129 opened Aug 14, 2024 by jbh2313
RAT error in --mode mcr
#128 opened Aug 11, 2024 by Pompamm
abnormally finished DIAMOND and BWA regarding
#127 opened Jun 27, 2024 by SrichandanPadhi
Process gets killed after 1st step of "make_diamond_database"
#126 opened Jun 12, 2024 by Harpreet525
ERROR: some bins have multiple classifications. CAT summarise currently does not allow for this
#125 opened Jun 11, 2024 by soojunglee98
Is RAT for single samples or multiple samples analysis?
#124 opened Jun 3, 2024 by biofuture
issue with add_names
#123 opened May 23, 2024 by SrichandanPadhi
CAT reads error "stat: path should be string, bytes, os.PathLike or integer, not NoneType"
#122 opened May 15, 2024 by noel1105
Simple issue -- github copy has $
#121 opened Apr 17, 2024 by nacnoriko
summarise error
#120 opened Apr 12, 2024 by ereyred
2
CAT: Database was built with a different version of Diamond and is incompatible.
#119 opened Mar 31, 2024 by ShangLiii
3
out of memory "Parsing alignment file"
#118 opened Mar 28, 2024 by gjordaopiedade
2
CAT prepare doesn't consider existing diamond database
#105 opened Dec 5, 2023 by nikolasbasler
1
No support below kingdom level for known E. coli contigs
#92 opened Aug 28, 2023 by mpgriesh
2
download.py unworked
#90 opened Jul 13, 2023 by bikmi
Failed in construction a new database
#89 opened Jun 26, 2023 by juntaowang
ProTip! Adding no:label will show everything without a label.