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Improvements for duckdb #1489

Merged
merged 7 commits into from
Mar 23, 2023
Merged

Improvements for duckdb #1489

merged 7 commits into from
Mar 23, 2023

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alistairewj
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  • mimic-iv version pulls directly from create.sql so we only have to maintain the postgres scripts (though, it does mean the sh file is no longer standalone, which is a disadvantage)
    • this updates the import to work with MIMIC-IV v2.2
  • shell script doesn't crash if there are other dirs with CSVs in them (but probably will still crash if the hosp/icu subdirs have CSV files for data not in MIMIC-IV)
  • fix the gh actions
  • incorporating mimic-iii duckdb build from added duckdb import for mimic3 as per #1238 #1239

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