Merge pull request #353 from xylar/switch_to_spack

Switch to building system libraries with Spack

compass/machines/anvil.cfg

@@ -29,5 +29,9 @@ mpi_intel = impi
 # the system MPI library to use for gnu compiler
 mpi_gnu = mvapich
 
-# the base path to system libraries to be added as part of setting up compass
-system_libs = /lcrc/soft/climate/compass/anvil/system
+# the base path for spack environments used by compass
+spack = /lcrc/soft/climate/compass/anvil/spack
+
+# whether to use the same modules for hdf5, netcdf-c, netcdf-fortran and
+# pnetcdf as E3SM (spack modules are used otherwise)
+use_e3sm_hdf5_netcdf = True

compass/machines/badger.cfg

@@ -29,5 +29,9 @@ mpi_intel = impi
 # the system MPI library to use for gnu compiler
 mpi_gnu = mvapich
 
-# the base path to system libraries to be added as part of setting up compass
-system_libs = /usr/projects/climate/SHARED_CLIMATE/compass/badger/system
+# the base path for spack environments used by compass
+spack = /usr/projects/climate/SHARED_CLIMATE/compass/badger/spack
+
+# whether to use the same modules for hdf5, netcdf-c, netcdf-fortran and
+# pnetcdf as E3SM (spack modules are used otherwise)
+use_e3sm_hdf5_netcdf = False

compass/machines/chrysalis.cfg

@@ -29,5 +29,9 @@ mpi_intel = impi
 # the system MPI library to use for gnu compiler
 mpi_gnu = openmpi
 
-# the base path to system libraries to be added as part of setting up compass
-system_libs = /lcrc/soft/climate/compass/chrysalis/system
+# the base path for spack environments used by compass
+spack = /lcrc/soft/climate/compass/chrysalis/spack
+
+# whether to use the same modules for hdf5, netcdf-c, netcdf-fortran and
+# pnetcdf as E3SM (spack modules are used otherwise)
+use_e3sm_hdf5_netcdf = True

compass/machines/compy.cfg

@@ -29,5 +29,11 @@ mpi_intel = impi
 # the system MPI library to use for gnu compiler
 mpi_pgi = mvapich2
 
-# the base path to system libraries to be added as part of setting up compass
-system_libs =  /share/apps/E3SM/conda_envs/compass/system
+# the base path for spack environments used by compass
+spack = /share/apps/E3SM/conda_envs/compass/spack
+
+# whether to use the same modules for hdf5, netcdf-c, netcdf-fortran and
+# pnetcdf as E3SM (spack modules are used otherwise)
+#
+# We don't use them on Compy because hdf5 and netcdf were build without MPI
+use_e3sm_hdf5_netcdf = False

compass/machines/conda-linux.cfg

@@ -0,0 +1,9 @@
+# Options related to deploying a compass conda environment on supported
+# machines
+[deploy]
+
+# the compiler set to use for system libraries and MPAS builds
+compiler = gnu
+
+# the system MPI library to use for gnu compiler
+mpi_gnu = mpich

compass/machines/conda-osx.cfg

@@ -0,0 +1,9 @@
+# Options related to deploying a compass conda environment on supported
+# machines
+[deploy]
+
+# the compiler set to use for system libraries and MPAS builds
+compiler = clang
+
+# the system MPI library to use for gnu compiler
+mpi_gnu = mpich

compass/machines/cori-haswell.cfg

@@ -29,8 +29,12 @@ mpi_intel = mpt
 # the system MPI library to use for gnu compiler
 mpi_gnu = mpt
 
-# the base path to system libraries to be added as part of setting up compass
-system_libs = /global/cfs/cdirs/e3sm/software/compass/cori-haswell/system
+# the base path for spack environments used by compass
+spack = /global/cfs/cdirs/e3sm/software/compass/cori-haswell/spack
+
+# whether to use the same modules for hdf5, netcdf-c, netcdf-fortran and
+# pnetcdf as E3SM (spack modules are used otherwise)
+use_e3sm_hdf5_netcdf = True
 
 # the version of ESMF to build if using system compilers and MPI (don't build)
 esmf = None

conda/albany_supported.txt

@@ -0,0 +1,7 @@
+# a list of supported machine, compiler and mpi combinations for Albany
+
+anvil, gnu, mvapich
+anvil, gnu, openmpi
+badger, gnu, mvapich
+chrysalis, gnu, openmpi
+cori-haswell, gnu, mpt