No freezing GUI when loading umap / writing targers by adding threading + Visualize loading with spinners #104
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - npe2 | |
| - action_test | |
| tags: | |
| - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| pull_request: | |
| branches: | |
| - main | |
| - npe2 | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| #platform: [ubuntu-latest, windows-latest, macos-latest] | |
| platform: [ubuntu-latest] | |
| #python-version: ['3.8', '3.9', '3.10'] | |
| python-version: ['3.10'] | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up conda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| mamba-version: "*" | |
| activate-environment: napari-tomotwin | |
| channel-priority: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge, defaults | |
| environment-file: conda_env.yml | |
| - run: conda --version | |
| - run: conda init bash | |
| - run: | | |
| which python | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install setuptools setuptools_scm pylint tox tox-gh-actions pytest pytest-coverage pytest-xvfb twine build napari-boxmanager | |
| pip install . | |
| - name: Debug Info | |
| run: | | |
| which python | |
| pip freeze | |
| - name: Analysing the code with pylint | |
| run: | | |
| pylint -E $(git ls-files '*.py') | |
| - name: Tests | |
| run: | | |
| pytest -v --cov=./ --cov-report=xml --cov-config=.coveragerc | |
| env: | |
| PLATFORM: ${{ matrix.platform }} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| deploy: | |
| # this will run when you have tagged a commit, starting with "v*" | |
| # and requires that you have put your twine API key in your | |
| # github secrets (see readme for details) | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| if: contains(github.ref, 'tags') | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -U setuptools setuptools_scm wheel twine build | |
| - name: Build and publish | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }} | |
| run: | | |
| git tag | |
| python -m build . | |
| twine upload dist/* |