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base repository: DataBiosphere/terra-docker
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base: master
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head repository: MPRAhub/terra-docker
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compare: master
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Able to merge. These branches can be automatically merged.
  • 2 commits
  • 2 files changed
  • 1 contributor

Commits on May 26, 2023

  1. Add MPRAbase Dockerfile

    Andrew Blair committed May 26, 2023
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    7b2c397 View commit details
  2. Add startup.sh

    Andrew Blair committed May 26, 2023
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    6bef87d View commit details
Showing with 9 additions and 0 deletions.
  1. +4 −0 terra-jupyter-MPRAbase/Dockerfile
  2. +5 −0 terra-jupyter-MPRAbase/startup.sh
4 changes: 4 additions & 0 deletions terra-jupyter-MPRAbase/Dockerfile
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FROM us.gcr.io/broad-dsp-gcr-public/terra-jupyter-r:2.1.9
RUN R -e "BiocManager::install(c('MPRAnalyze', 'MultiAssayExperiment','BiocStyle','iSEE', 'nullranges', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19'), dependencies=TRUE)"
RUN R -e "install.packages('synapser', repos = c('http://ran.synapse.org', 'http://cran.fhcrc.org'))"
RUN R -e "install.packages(c('paws.storage', 'urltools', 'testthat'), dependencies=TRUE)"
5 changes: 5 additions & 0 deletions terra-jupyter-MPRAbase/startup.sh
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R -e "BiocManager::install(c('MPRAnalyze', 'MultiAssayExperiment','BiocStyle','iSEE', 'nullranges', 'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Hsapiens.UCSC.hg19'), dependencies=TRUE)"
R -e "install.packages('synapser', repos = c('http://ran.synapse.org', 'http://cran.fhcrc.org'))"
R -e "install.packages(c('paws.storage', 'urltools', 'testthat'), dependencies=TRUE)"
conda install -c conda-forge pandoc
R -e "install.packages(c('paws.storage', 'urltools', 'testthat'), dependencies=TRUE)"