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As reported on forum.

Bug is the consequence of #1389.

Unfortunately it seems nobody used explicit volume recombination on dev for the last two years, I didn't spot the issue, and the script test suite has to call testing_diff_header without the -keyval flag because eddy is stochastic...

@Lestropie Lestropie requested a review from a team May 30, 2020 15:14
@Lestropie Lestropie self-assigned this May 30, 2020
Due to copying header properties from the original input DWI in order to preserve header key-values and appropriately concatenate "command_history", the contents of "dw_scheme" were being erroneously overwritten by the original gradient table of the input DWI. This fix ensures that the updated version generated during the script - whether including motion correction and/or explicit volume recombination - is propagated to the final output image.
@jdtournier
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flagellator

@jdtournier jdtournier merged commit 3a3b608 into master Jun 1, 2020
@jdtournier jdtournier deleted the dwifslpreproc_dwscheme_fix branch June 1, 2020 23:03
@Lestropie
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Only 4 hours per charge?

rookienumbers

@jdtournier jdtournier added this to the MRtrix3 3.0.1 milestone Jun 10, 2020
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3 participants