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26 Open 115 Closed
26 Open 115 Closed
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Issues list

.select_to_varnames() and .formula_list_to_named_list() to be deprecated
#348 opened Aug 23, 2024 by ddsjoberg
Add summarize_by_patient() function
#345 opened Jun 27, 2024 by karissawhiting
add unit testing for add_point_mut()
#343 opened May 9, 2024 by hfuchs5
Update Docs to make sure new SV is canon-cbio has deprecated fusion files for sv
#338 opened Nov 9, 2023 by hfuchs5
unit testing for tbl_genomic(..., wide = T) needed
#337 opened Nov 9, 2023 by hfuchs5
1
unit testing for mutation type attribute on create_gene_binary()
#336 opened Nov 2, 2023 by hfuchs5
@karissawhiting
Large datasets (1,000s of patients) takes a long time in summarize_by_gene()
#329 opened Oct 22, 2023 by hfuchs5
@karissawhiting
Check how vdiffr is counted for code coverage in tests
#327 opened Oct 5, 2023 by karissawhiting
@karissawhiting
Add annotation of point mutations in create gene binary pipeline ready for review
#322 opened Aug 31, 2023 by karissawhiting
@hfuchs5
3
cbio vs synapse GENIE BPC data fusion discrepancy in names future
#312 opened Jun 20, 2023 by hfuchs5
"LOSS" not accepted as an alteration type for pivot_cna_wider pre-hackathon
#309 opened Jun 15, 2023 by hfuchs5
@karissawhiting @hfuchs5
1
Allow subset_by_frequency to calculate and subset by group frequency enhancement New feature or request hackathon
#305 opened May 16, 2023 by karissawhiting
gene_binary duplicated IDs pre-hackathon
#294 opened Apr 27, 2023 by jflynn264
@hfuchs5
6
Minor bugs in create_gene_binary() pre-hackathon
#293 opened Apr 27, 2023 by akriti21
@karissawhiting
4
Add internal function to check binary matrix inputs cran future
#280 opened Apr 4, 2023 by karissawhiting
@karissawhiting
Create text binary matrix which retains specific mutation type in matrix ready for review
#263 opened Feb 21, 2023 by karissawhiting
@michaelcurry1123 @hfuchs5
16
Create a vignette for copy number data hackathon
#258 opened Feb 14, 2023 by hfuchs5 Caroline Review of v1.2.0
@karissawhiting @alrein-05 @carokos
Add an example to vignette and/or docs that changes color palette of the ggcor or ggcomut plot hackathon
#257 opened Feb 14, 2023 by hfuchs5 Caroline Review of v1.2.0
2
Improve documentation and color defaults for ggcomut hackathon
#256 opened Feb 14, 2023 by hfuchs5 Caroline Review of v1.2.0
@michaelcurry1123
1
Allow users to select specific genes in ggcor (or add example of preselecting genes)
#255 opened Feb 14, 2023 by hfuchs5 Caroline Review of v1.2.0
Colorblind color palette hackathon
#231 opened Dec 13, 2022 by karissawhiting
8
putting recoded cna character amp/del values into pivot_cna_wider() returns numeric values
#224 opened Dec 5, 2022 by hfuchs5
1
Review Segmentation Functions
#210 opened Nov 15, 2022 by karissawhiting
@karissawhiting
1
Outstanding cBioPortal Data Questions
#207 opened Nov 11, 2022 by karissawhiting
Consider adding an additional merged version where fusions/cna/mutations are all separate side by side merged tables. Maybe we can come up with a prototype of this at the hackathon enhancement New feature or request hackathon large takes more time
#197 opened Nov 2, 2022 by karissawhiting
@slb2240
2
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