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quick fix for save_hdf codes #6

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merged 1 commit into from
Oct 28, 2021
Merged

quick fix for save_hdf codes #6

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12 changes: 6 additions & 6 deletions alphabase/speclib/decoy_library.py
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Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ def _decoy_meta(self):

def _decoy_mod(self):
"""
Decoy for modifications and modification sits
Decoy for modifications and modification sites
"""
pass

Expand Down Expand Up @@ -65,11 +65,11 @@ def save_hdf(self, hdf_file):
truncate=True,
delete_existing=False
)
_hdf_lib = _hdf.library
_hdf_lib.add_group('decoy',{})
_hdf_lib.decoy.precursor_df = self._precursor_df
_hdf_lib.decoy.fragment_mass_df = self._fragment_mass_df
_hdf_lib.decoy.fragment_inten_df = self._fragment_inten_df
_hdf.library.decoy = {
'precursor_df': self._precursor_df,
'fragment_mass_df': self._fragment_mass_df,
'fragment_inten_df': self._fragment_inten_df,
}

def load_hdf(self, hdf_file):
_hdf = HDF_File(
Expand Down
9 changes: 5 additions & 4 deletions alphabase/speclib/library_base.py
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Original file line number Diff line number Diff line change
Expand Up @@ -140,10 +140,11 @@ def save_hdf(self, hdf_file):
truncate=True,
delete_existing=True
)
_hdf.add_group('library',{})
_hdf.library.precursor_df = self._precursor_df
_hdf.library.fragment_mass_df = self._fragment_mass_df
_hdf.library.fragment_inten_df = self._fragment_inten_df
_hdf.library = {
'precursor_df': self._precursor_df,
'fragment_mass_df': self._fragment_mass_df,
'fragment_inten_df': self._fragment_inten_df,
}

def load_hdf(self, hdf_file):
_hdf = HDF_File(
Expand Down
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