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24 Open 28 Closed
24 Open 28 Closed
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Issues list

Downsampling Segmentation produces incorrectly scaled debug output images
#131 opened Dec 9, 2024 by nik-as
graph-tool not available despite being installed
#124 opened Dec 3, 2024 by MarcMarc94
1
Make it easier for users to contribute to scPortrait
#121 opened Nov 30, 2024 by sophiamaedler
3 tasks
1
@namsaraeva
1
Stitching fails on Windows due to temp_mmap array size error
#111 opened Nov 15, 2024 by MarcMarc94
Segmentation Error when using cellpose 3.1.0 on MacOS MPS backend
#106 opened Nov 14, 2024 by sophiamaedler
3
Binary mask tiles are not correctly stitched
#100 opened Nov 10, 2024 by MarcMarc94
1
ChannelSelector num_channels parameter enhancement New feature or request
#82 opened Sep 18, 2024 by namsaraeva
@namsaraeva
2
update documentation
#64 opened Aug 29, 2024 by sophiamaedler
@sophiamaedler @nik-as
3
java dependency from pynius
#62 opened Aug 29, 2024 by sophiamaedler
1
Review requirements.txt
#53 opened Aug 27, 2024 by namsaraeva
6
Tissue Region masking in scPortrait
#50 opened Aug 17, 2024 by sophiamaedler
1
@sophiamaedler @LLehner
5
slow resolving of sharding
#49 opened Aug 11, 2024 by sophiamaedler
Features to implement for spatialdata
#47 opened Aug 2, 2024 by sophiamaedler
2 tasks
make classification directory first at run not at init
#46 opened Aug 2, 2024 by sophiamaedler
@sophiamaedler @namsaraeva
1
Coding best practices
#43 opened Jul 26, 2024 by Zethson
@sophiamaedler @Zethson
2
cell_ids are not saved to sdata file bug Something isn't working
#42 opened Jul 24, 2024 by sophiamaedler
1
CZI reader for loading input images bug Something isn't working help wanted Extra attention is needed
#41 opened Jul 16, 2024 by sophiamaedler
2
utilize spatialdata format to save scPortrait results
#40 opened Jul 14, 2024 by sophiamaedler
4 of 11 tasks
5
discrepancies in number of segmented nuclei in WGA segmentation method between different environments
#36 opened Jul 3, 2024 by sophiamaedler
@sophiamaedler @namsaraeva
3
run pipeline on windows computer
#28 opened Jun 24, 2024 by sophiamaedler
@sophiamaedler
4
Enhance docstrings and add examples documentation Improvements or additions to documentation
#25 opened Jun 15, 2024 by namsaraeva
@Zethson @namsaraeva
6
Add more flexibility to VGG model image size enhancement New feature or request
#24 opened Jun 15, 2024 by namsaraeva
@namsaraeva
1
testing: implement full pipeline test with an example datasets
#9 opened Jun 4, 2024 by sophiamaedler
9 tasks
2
Code Refactoring for scPortrait Release
#6 opened Jun 4, 2024 by sophiamaedler
4 of 9 tasks
ProTip! Updated in the last three days: updated:>2024-12-29.