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@MarioniLab

Marioni Laboratory

A central repository for projects in John Marioni's group

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  1. miloR miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    R 342 22

  2. EmbryoTimecourse2018 EmbryoTimecourse2018 Public

    Data and analysis scripts for our Embryo Timecourse paper.

    HTML 65 35

  3. miloDE miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    R 58 2

  4. DropletUtils DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    R 56 27

  5. MNN2017 MNN2017 Public archive

    Code for the MNN manuscript figures

    HTML 50 19

  6. scran scran Public

    Clone of the Bioconductor repository for the scran package.

    R 40 22

Repositories

Showing 10 of 90 repositories
  • COSICC Public

    COSICC R package

    MarioniLab/COSICC’s past year of commit activity
    HTML 0 0 0 0 Updated Nov 8, 2024
  • miloR Public

    R package implementation of Milo for testing for differential abundance in KNN graphs

    MarioniLab/miloR’s past year of commit activity
    R 342 GPL-3.0 22 20 0 Updated Oct 29, 2024
  • oor_benchmark Public

    A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data

    MarioniLab/oor_benchmark’s past year of commit activity
    Python 13 MIT 2 1 0 Updated Oct 21, 2024
  • analysis_chimera_data Public

    Systematic characterisation of perturbations in complex developing cell populations reveals mechanisms underpinning development and disease

    MarioniLab/analysis_chimera_data’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 16, 2024
  • DropletUtils Public

    Clone of the Bioconductor repository for the DropletUtils package.

    MarioniLab/DropletUtils’s past year of commit activity
    R 56 27 14 0 Updated Oct 6, 2024
  • cydar Public

    Clone of the Bioconductor repository for the cydar package.

    MarioniLab/cydar’s past year of commit activity
    R 1 2 0 0 Updated Sep 6, 2024
  • scran Public

    Clone of the Bioconductor repository for the scran package.

    MarioniLab/scran’s past year of commit activity
    R 40 22 18 1 Updated Sep 5, 2024
  • BE_perturb_seq_drug_resistance Public
    MarioniLab/BE_perturb_seq_drug_resistance’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 26, 2024
  • miloDE Public

    Framework for sensitive DE testing (using neighbourhoods)

    MarioniLab/miloDE’s past year of commit activity
    R 58 2 4 0 Updated Jul 20, 2024
  • CELLOseq Public

    Transposable element expression at unique loci in single cells with CELLO-seq

    MarioniLab/CELLOseq’s past year of commit activity
    Shell 7 MIT 4 1 0 Updated Jun 17, 2024
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