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Hi,
First, thank you for the tutorials included with this package, I find them extremely helpful and have been able to implement most of your code on my data. I was however trying to use get_DE_genes setting the celltype.id to something other than "celltype". My SCE object has "cluster" as one of the columns in colData yet when I set celltype.id = "cluster" I get the following error:
"cluster" in sce_data:
When I investigated the .check_celltype_in_sce it looks like "celltype" is hardcoded in? I am also new to coding in R (mostly used Python in the past) so apologies if that is not the issue. Thanks for the help.
The text was updated successfully, but these errors were encountered:
Hi,
First, thank you for the tutorials included with this package, I find them extremely helpful and have been able to implement most of your code on my data. I was however trying to use
get_DE_genes
setting thecelltype.id
to something other than "celltype". My SCE object has "cluster" as one of the columns in colData yet when I setcelltype.id = "cluster"
I get the following error:"cluster" in sce_data:
When I investigated the
.check_celltype_in_sce
it looks like "celltype" is hardcoded in? I am also new to coding in R (mostly used Python in the past) so apologies if that is not the issue. Thanks for the help.The text was updated successfully, but these errors were encountered: