healthcare_informatics_2018 *

Analysis of the NIH Clinical Center DeepLesion dataset.

Setup

Create a new conda environmnent

conda create -n deeplesion python=3.6

Activate the environment

source activate deeplesion

Install CUDA 9.2 (V9.2.148)

Using Nvidia Driver Version: 396.54

Packages:

• seaborn
• numpy
• pandas
• scikit-image
• scikit-learn
• pytorch
• jupyter

For mac use this command to install pytorch for python and anaconda

This is due to mac laptops not having Nvidia gpus and therefore they cannot run CUDA.

conda install pytorch torchvision -c pytorch

THIS DOES NOT WORK, IGNORE

The Python dependencies are listed in the requirements.txt file.

The following command will install all the required packages

while read requirement; do conda install --yes $requirement; done < requirements.txt