-
Notifications
You must be signed in to change notification settings - Fork 0
pathview
MetabolomicsAustralia-Bioinformatics edited this page Jan 8, 2020
·
1 revision
Produces visualizations of enriched pathways given genomics and metabolomics data. Overall, though, I'm not terribly confident in what it produces.
- Available as a web page (which, unfortunately, has a tendency to fail silently without telling you why), R package (which is slightly clunky when attempting multi-omics analysis) and as a script that calls an API (the best so far for bulk requests).
- The input is too generalized, accepting log-fold abundances, p-values, or test statistics, making it difficult to envision what kind of model or calculations are being performed.
- Avoid for the moment, still being evaluated