add new api translation, enable analysis print

Minimap2onGPU · Oct 12, 2023 · cd225fa · cd225fa
1 parent 247a17f
commit cd225fa
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/gpu/hipify.cuh b/gpu/hipify.cuh
@@ -30,6 +30,7 @@
 #define     cudaEventQuery                  hipEventQuery
 #define     cudaEventDestroy                hipEventDestroy
 #define     cudaEventElapsedTime            hipEventElapsedTime
+#define     cudaStreamWaitEvent             hipStreamWaitEvent
 #define cudaCheck() {                                                       \
     hipError_t err = hipGetLastError();                                     \
     if (hipSuccess != err) {                                                \

diff --git a/scripts/acc_integrated.slurm b/scripts/acc_integrated.slurm
@@ -25,7 +25,7 @@ module load rocm-5.4.3
 # Replace the following line with the actual command(s) you want to run
 cd /shared/prod/home/liuxs/bioinfo/minimap2/
 make clean
-make GPU_CONFIG=gpu_config.json SHORT_BLOCK_SIZE=64 LONG_BLOCK_SIZE=1024 MID_BLOCK_SIZE=512 MID_CUT=1 LONG_CUT=100
+make DEBUG_ANALYSIS=1 GPU_CONFIG=gpu_config.json SHORT_BLOCK_SIZE=64 LONG_BLOCK_SIZE=1024 MID_BLOCK_SIZE=512 MID_CUT=1 LONG_CUT=100
 # ./minimap2 -t 1 --max-chain-skip=2147483647 --gpu-chain /shareddata/umich_folder/data/ONT/hg38.mmi /shareddata/umich_folder/data/ONT/reads_4f452f4a-d82a-4580-981b-32d14b997217.fa
 ./minimap2 -t 1 --max-chain-skip=2147483647 --gpu-chain /shareddata/umich_folder/data/ONT/hg38.mmi /shareddata/umich_folder/data/ONT/random_500MBases_200kto300k.fa
 # ./minimap2 -t 1 --max-chain-skip=2147483647 --gpu-chain /shareddata/umich_folder/data/ONT/hg38.mmi /shareddata/umich_folder/data/ONT/short_seg_reads_from_1kto10k_distri.fa